I am trying to extract some information from a CIF file using JMol from the
command line on a server.
PHP is executing the JMol jar file and then I just need to get the
information into STDOUT.
For instance:
java -jar Jmol.jar -onj "load mycif.cif; getProperty modelInfo"
raises a java.awt.HeadlessException because, I suppose, even though the -n
flag is set, one of the objects created by JMol is an AWT or Swing object.
So then I tried switching to JmolData.jar, but the getProperty modelInfo
command doesn't work when that is run. For some reason, none of the
modelInfo.XXXX[] appear in the console output. How can I get JmolData.jar
to give me this information?
Thanks,
John
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