Sweet, thanks! I hadn't seen the link before in your email, but that worked
perfectly.
One other problem I noticed with the JMol.jar you uploaded, though it isn't
a problem for me because I'm using JMolData.jar, is that the -i flag does
not work correctly for JMol.jar.
If I run
java -jar JmolData.jar -ionj "load 1010938.cif; getProperty bondInfo"
it correctly only prints the bondInfo as expected. However if I use Jmol
.jar:
java -jar Jmol.jar -ionj "load 1010938.cif; getProperty bondInfo"
nothing gets printed at all.
-John
On Wed, Sep 17, 2014 at 4:13 PM, John Bowers <
[email protected]> wrote:
> Sweet, thanks! I hadn't seen the link before in your email, but that
> worked perfectly.
>
> One other problem I noticed with the JMol.jar you uploaded, though it
> isn't a problem for me because I'm using JMolData.jar, is that the -i flag
> does not work correctly for JMol.jar.
>
>
> If I run
>
> java -jar JmolData.jar -ionj "load 1010938.cif; getProperty bondInfo"
>
> it correctly only prints the bondInfo as expected. However if I use
> Jmol.jar:
>
> java -jar Jmol.jar -ionj "load 1010938.cif; getProperty bondInfo"
>
> nothing gets printed at all.
>
>
> -John
>
>
> On Tue, Sep 16, 2014 at 10:59 PM, Robert Hanson <[email protected]>
> wrote:
>
>> That's why I uploaded that fix. You sure it didn't fix the problem with
>> this new version? I think so. It fixed it for me. JmolData was exiting just
>> prior to reporting. That's all.
>>
>> Jmol.___JmolVersion="14.3.7_2014.09.16"
>>
>> bug fix: chainCaseSensitive ignored for select :a
>> bug fix: JmolData not reporting out properly
>>
>> Using
>>
>> java -Djava.awt.headless=true -Xmx512m -jar "JmolData.jar" -ionj "load
>> mycif.cif; getProperty modelInfo"
>>
>> I get:
>>
>> modelInfo.models *List[1]
>> modelInfo.models[1].atomCount 2
>> modelInfo.models[1]._ipt 0
>> modelInfo.models[1].name "global"
>> modelInfo.models[1].bondCount 1
>> modelInfo.models[1].file_model "1.1"
>> modelInfo.models[1].polymerCount 0
>> modelInfo.models[1].file "C:/jmol-dev/bobtest/mycif.cif"
>> modelInfo.models[1].moleculeCount 1
>> modelInfo.models[1].chainCount 1
>> modelInfo.models[1].num 1
>> modelInfo.models[1].vibrationVectors false
>> modelInfo.models[1].title "global"
>> modelInfo.models[1].groupCount 1
>> modelInfo.modelsSelected [0]
>> modelInfo.modelSetName "global"
>> modelInfo.isTainted false
>> modelInfo.modelSetHasVibrationVectors false
>> modelInfo.modelSetProperties.PATH_SEPARATOR ";"
>> modelInfo.modelSetProperties.PATH_KEY ".PATH"
>> modelInfo.canSkipLoad true
>> modelInfo.modelCountSelected 1
>> modelInfo.modelCount 1
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Want excitement?
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>> Perforce version control. Predictably reliable.
>>
>> http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk
>> _______________________________________________
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>>
>>
>
------------------------------------------------------------------------------
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