Rolf, I'm not seeing the issue with
http://chemapps.stolaf.edu/jmol/test/ibuprofen.gif
This was from:
load $ibuprofen
background [x303030]
color carbon black
capture "ibuprofen" spin x
What are we doing differently?
Bob
On Thu, Oct 16, 2014 at 9:11 AM, Brenton Horne <[email protected]>
wrote:
> NVM I've figured it out myself.
> On 16/10/2014 11:48 PM, Brenton Horne wrote:
> > Hi
> >
> > I'm not sure whom else to ask but I updated Java this morning, and for
> > some reason Jmol isn't running anymore it's asking me which program to
> > run it with. I went through my programs and selected a java application
> > (.exe) in my program files and it opened a command prompt, this prompt
> > closed soon after and no Jmol window opened.
> >
> > Thanks for your time,
> > Brenton
> >
> > On 16/10/2014 11:11 PM, Rolf Huehne wrote:
> >> On 10/16/2014 04:43 AM, Robert Hanson wrote:
> >>> http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.8_2014.10.15.zip
> >>>
> >>> Definitely better. No more stray lines if the background is
> transparent,
> >>> which is what counts.
> >>>
> >>> Do give this a try, Rolf.
> >>>
> >> I tried it and here are the results in comparison:
> >> capture:
> >>
> http://www.fli-leibniz.de/~rhuehne/jmol/bupropion-capture-antialias_off.gif
> >>
> >> PNGT->Gimp:
> >>
> http://www.fli-leibniz.de/~rhuehne/jmol/bupropion-movie-antialias_off.gif
> >>
> >> The Gimp movie still looks considerably better (smoother, less dotted)
> >> than the improved Jmol movie.
> >>
> >> For 'capture' I used the following commands after setting the window
> >> size to get the image resolution of 1362x617 pixel:
> >> ---------------------
> >> background yellow;
> >> set antialiasImages off;
> >> animation mode loop
> >> animation fps 7
> >> ndegrees = 2
> >> nFrames = 180
> >> capture "bupropion-capture-antialias_off.gif" 1000 transparent;
> >> for (var i = 1; i<= nFrames; i++) {
> >> rotate x @ndegrees;
> >> refresh;
> >> }
> >> capture;
> >> --------------------
> >>
> >> For PNGT export I used the following commands:
> >> ---------------------
> >> set antialiasImages off;
> >> exportAnimation("bupropion-movie","1362", "617", "180", "rotate
> >> axisangle {1 0 0} 2", "yellow")
> >> ---------------------
> >> And in Gimp I manually applied indexing to 255 colors using the
> >> Floyd-Steinberg dithering option with reduced color bleeding.
> >> During export as GIF I set the delay to 140ms and the disposal method to
> >> 'one frame per layer (replace)'.
> >>
> >> Regards,
> >> Rolf
> >
> >
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>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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