On 10/16/2014 04:52 PM, Robert Hanson wrote:
> Rolf, I'm not seeing  the issue with
>
> http://chemapps.stolaf.edu/jmol/test/ibuprofen.gif
>
> This was from:
>
> load $ibuprofen
> background [x303030]
> color carbon black
> capture "ibuprofen" spin x
>
> What are we doing differently?
>
It's the number of colors needed. In your example you only have red 
white and black. If you add colors by these commands it gets much worse:

select atomno=23; color blue
select atomno=18; color lightgreen

Without transparent background like you did it, it looks even worse than 
with transparent background.

Regards,
Rolf

-- 

Rolf Huehne
Postdoc

Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
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