Hi Robert Been using the site and code you posted. Very useful, thanks. But ... how much scripting is it possible to do on the url?
For example, consider http://chemapps.stolaf.edu/jmol/jmol.php?source=http://figshare.com/download/file/1828552&width=600&height=600 where the script &width=600&height=600 alters width and height from the default settings. How far can this be taken? If I had a *.cml file that contained the stitched together frames of two intrinsic reaction coordinate calculations (forward and backwards from the transition state) could I make this file run through an animation by amending the url with script? Thanks again Darren. On 6 December 2014 at 23:25, Robert Hanson <hans...@stolaf.edu> wrote: > So just to follow up on my last note: > > http://chemapps.stolaf.edu/jmol/jmol.php?source=http://files.figshare.com/1825432/MeOH_NMR01b.log > > Displays your model. That is not very interesting, though. The thing to do > is, from your Jmol application, display whatever you particularly want to > show your colleagues. Then save that in PNGJ file format. For example: > > load "myfile.out" > MO HOMO > write PNGJ "test.png" > > then upload that to fileshare.com and make it public. Provide the line above > in the same fashion. For example, here is your HOMO: > > http://chemapps.stolaf.edu/jmol/jmol.php?source=http://figshare.com/download/file/1828552 > > from a PNGJ file that I shared. http://figshare.com/download/file/1828552 > > Here it is a bit larger: > > http://chemapps.stolaf.edu/jmol/jmol.php?source=http://figshare.com/download/file/1828552&width=600&height=600 > > In addition, if these colleagues also have a Jmol application, all you have > to do is attach the PNGJ file to your email and suggest that they download > it and drag it into their version of Jmol. > > > > > > > > On Sat, Dec 6, 2014 at 3:51 PM, Robert Hanson <hans...@stolaf.edu> wrote: >> >> You can use >> >> >> http://chemapps.stolaf.edu/jmol/jmol.php?source=http://introchem.chem.okstate.edu/DCICLA/jmol/molecules/II.A.1.ch3ch3.smol >> >> Where you just change the source attribute to whatever URL you want. >> >> See >> >> http://chemapps.stolaf.edu/jmol/jmol.php >> >> for details. >> >> >> >> >> On Fri, Dec 5, 2014 at 6:32 PM, darren.rhodes <darren.rho...@gmail.com> >> wrote: >>> >>> Is there a site where I can post a link to a structure - I'm thinking >>> of a GAMESS (US) log file - which would return the jmol object of the >>> structure in the file? >>> >>> That is, say I want to share a file with a broader audience, rather >>> than building and hosting a web page, is there a web page out there >>> where I can ask others to post a figshare url which would show the >>> structure in jmol? >>> >>> Thanks >>> >>> Darren. >>> >>> -- >>> "I have no doubt that if a party creates and sends an electronically >>> created document then he will be treated as having signed it to the >>> same extent that he would in law be treated as having signed a hard >>> copy of the same document. The fact that the document is created >>> electronically as opposed to as a hard copy can make no difference." >>> Pelling J in Mehta v J Pereira Fernandes SA [2006] EWHC 813 (Ch) >>> >>> Key ID:- 0xB76FE0B9 http://pgpkeys.mit.edu:11371/ >>> >>> >>> ------------------------------------------------------------------------------ >>> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server >>> from Actuate! Instantly Supercharge Your Business Reports and Dashboards >>> with Interactivity, Sharing, Native Excel Exports, App Integration & more >>> Get technology previously reserved for billion-dollar corporations, FREE >>> >>> http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk >>> _______________________________________________ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> Chair, Department of Chemistry >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Department of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > ------------------------------------------------------------------------------ > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- "I have no doubt that if a party creates and sends an electronically created document then he will be treated as having signed it to the same extent that he would in law be treated as having signed a hard copy of the same document. The fact that the document is created electronically as opposed to as a hard copy can make no difference." 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