On Fri, Jan 23, 2015 at 5:30 PM, Eric Martz <ema...@microbio.umass.edu>
wrote:
> OK then Bob, sounds like we can come close.
>
> How would I restrict to the atoms between the planes of e.g. depth 45 and
> slab 55? I could then rotate that restricted "slab" of atoms, even though
> the atomic edges would not be flat where they intersect the slab planes.
>
>
load 1crn.pdb
depth 45
slab 55
refresh
dp = _depthPlane
sp = _slabPlane
print dp
print sp
display within(-1000,plane, @{_slabPlane}) and within(1000,plane,
@{_depthPlane})
sorry about the refresh being needed -- that will be fixed.
> And how would I make a translucent van der Waals isosurface (pretty close
> to spacefill) and slab it and rotate the slab containing the restricted
> (opaque) atoms?
>
isosurface s1 vdw
isosurface slab none slab -@dp slab @sp
>
> Eric
>
>
------------------------------------------------------------------------------
New Year. New Location. New Benefits. New Data Center in Ashburn, VA.
GigeNET is offering a free month of service with a new server in Ashburn.
Choose from 2 high performing configs, both with 100TB of bandwidth.
Higher redundancy.Lower latency.Increased capacity.Completely compliant.
http://p.sf.net/sfu/gigenet
_______________________________________________
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
