Hi all, I am looking for a replacement for the PDB format that offers the same options like predefined atom numbers, atom names, residue names etc. after loading into Jmol. But without the restrictions of the PDB format regarding atom count and residue number count.
Q: Is there anything other than the (horrible) mmCIF format that Jmol can read and interpret similarly to the PDB format? I had hoped for the CML format that can be build easily but Jmol doesn't seem to interpret any of the attributes like 'id' or 'title'. I was also astonished that 'molecule' is interpreted as 'model' and not as 'chain' and have no idea if it is possible to get something interpreted as residues. What I actually want to do is to build the model data within Jmol from other data files and let Jmol also define the coordinates. The model data should then be loaded from a variable. I am currently doing this externally and build a PDB format file that is loaded into Jmol. But I need to get rid of the PDB format limitations and of the external model file construction. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
