On 01/29/2015 06:21 PM, Robert Hanson wrote: > I guess it must have to do with what you mean by "etc"?? Maybe I did not > understand your original question: > > > > > > > > > *Hi all, I am looking for a replacement for the PDB format that offers the > same options like predefined atom numbers, atom names, residue names etc. > after loading into Jmol. But without the restrictions of the PDB format > regarding atom count and residue number count.* > > ?? > Bob, there are two separate issues here.
My actual question was about formats that Jmol can load and that have similar rich annotation possibilities like the PDB format that are interpreted by Jmol and are available as if a PDB file would have been loaded. A possible candidate that I would have liked would be the CML format. But according to my tests almost none of the available information except for the coordinates seems to be interpreted by Jmol. Another candidate that I don't like would be the mmCIF format. Without actually testing it in Jmol I assumed that Jmol would interpret it the same way like PDB format files and make the same annotations available (see above, etc. includes for example chain id, model number). Instead of answering my question you went into a different direction, namely why I don't like the mmCIF format. But this is a totally separate issue that is not Jmol-related and not related to my question. It is about extracting all the data needed for the JenaLib database from mmCIF files instead of PDB files because not all PDB entries are available any more in PDB format since December 2015. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
