Hi Brenton,
Documentation on MediaWiki is probably completely outdated.
I was the one who wrote it originally, but it was a long time ago, and
since modifications have been made to the extension and many versions of MW
have been released.
Are you also the one who asked about this on the extension talk page in MW ?
https://www.mediawiki.org/wiki/Extension_talk:Jmol
I'm currently travelling until mid February, I can't do much until then.
Other people here will probably help you, since the extension is running on
several wikis I believe.
Nico
On Thu, Feb 5, 2015 at 9:38 PM, Brenton Horne <brentonho...@ymail.com>
wrote:
> Hi,
>
> I see many developers of Jmol also helped develop the MediaWiki Jmol
> extension, hence why I felt this would be a decent enough place to ask
> for help with it. I followed the installation instructions @ MediaWiki's
> Extension:Jmol page, without any obvious problems.
>
> Then when all the steps were finished (including checking
> special:version to see if the extension was added, which it was) I
> tested it out by adding <jmolPdb>3EIG</jmolPdb> (and other Jmol-related
> wikitext like <jmolFile>(S)-nicotine.sdf</jmolFile> where
> (S)-nicotine.sdf is the name of a file on my Wiki) to a random page and
> clicking submit. This resulted in me being left at a blank submit page
> (i.e., with PAGENAME?action=submit in the address bar). I have tried and
> retried this just in case I encountered some random server problem, but
> each time I got the same results.
>
> I have since customized my Jmol.body.php file and the structure/naming
> of the jsmol extension direct according to the file locations specified
> in Jmol.body.php in an attempt to overcome this problem. I have had some
> (sort of) success in that now I can save a page with these tags in it
> without that submit error, but JSmol applet still isn't embedded into
> the page. Rather where these tags are placed the PDB ID or file name
> appears and is hyperlinked to a javascript command.
>
> If it helps this is my current Jmol.body.php script:
>
> https://drive.google.com/file/d/0B1_sXH68hMWBT1VrMTRNbzJSOHM/view?usp=sharing
> .
>
> Thanks for your time,
> Brenton
>
>
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