Hi Phil

> OK. It does not work with my implementation on any of the browsers on the 
> mac, but it does with 
> your jsmol.htm file. So it's me:-(

gzipped files must go via jsmol.php at least for some browsers. With local 
pages and files I usually have problems loading locally (since php is not 
possible locally). It could be related to this.
Have you set properly the "server path" (to jsmol.php)? That would affect for  
pages from web server.


>     structure is type of secondary structure -- different types of helix, 
> sheet, etc.

Yes. Documented in the web, http://jmol.sourceforge.net/jscolors/


>     group is just 1->n within each chain.

You can also think of it as residue number (proteins and nucleic acids), 
although hetero groups will also have a number.
Color by group is a rainbow (see webpage above)
There is both "color group" and "color monomer" which behave different in 
some models (absolute or relative rainbow)


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