That did it, Seth!
git config --global url."https://github.com/".insteadOf git://github.com
Just ran the Julia Pkg.add("HDF5") and it worked splendidly!
Thanks for your help!
-Jeff. :)
On Thu, Feb 19, 2015 at 4:53 PM, Seth <[email protected]> wrote:
> Get it working on the command line first :)
>
> On Thursday, February 19, 2015 at 1:52:44 PM UTC-8, Jeff Kopmanis wrote:
>>
>> Thanks. That article recommends using https: instead of git: Could it
>> be a MIME-type error or misconfig?
>>
>> If I want to use the https URL, where do you change that? Is there a
>> setup file somewhere?
>>
>> On Thu, Feb 19, 2015 at 4:49 PM, Seth <[email protected]> wrote:
>>
>>> That looks unrelated, but the linked issue (
>>> https://github.com/JuliaLang/julia/issues/8810) might help.
>>>
>>> On Thursday, February 19, 2015 at 1:46:30 PM UTC-8, Jeff Kopmanis wrote:
>>>>
>>>> Found something... it might be a combination of the v0.3 Julia and >=
>>>> 10.8 OSX....
>>>>
>>>> https://github.com/JuliaLang/julia/issues/6880
>>>>
>>>> On Thu, Feb 19, 2015 at 4:43 PM, Jeff Kopmanis <[email protected]>
>>>> wrote:
>>>>
>>>>> nope. Identically.
>>>>>
>>>>> I did sysadmin for nearly 17 years at the UMich math dept (macOSX,
>>>>> solaris, linux) and this one has me scratchin' my head.
>>>>>
>>>>> On Thu, Feb 19, 2015 at 4:42 PM, Seth <[email protected]> wrote:
>>>>>
>>>>>> I'm at a loss. I'm using the OSX git (part of xcode) on 10.10.2. If
>>>>>> you try both the OSX version and the macports version (using absolute
>>>>>> paths
>>>>>> to confirm), do they behave differently?
>>>>>>
>>>>>> On Thursday, February 19, 2015 at 1:35:23 PM UTC-8, Jeff Kopmanis
>>>>>> wrote:
>>>>>>>
>>>>>>> This is my ~/.gitconfig:
>>>>>>>
>>>>>>> [user]
>>>>>>> name = Jeff Kopmanis
>>>>>>> email = [email protected]
>>>>>>> [core]
>>>>>>> excludesfile = /Users/kopmanis/.gitignore_global
>>>>>>> [difftool "sourcetree"]
>>>>>>> cmd = opendiff \"$LOCAL\" \"$REMOTE\"
>>>>>>> path =
>>>>>>> [mergetool "sourcetree"]
>>>>>>> cmd = /Applications/SourceTree.app/C
>>>>>>> ontents/Resources/opendiff-w.sh \"$LOCAL\" \"$REMOTE\" -ancestor
>>>>>>> \"$BASE\" -merge \"$MERGED\"
>>>>>>> trustExitCode = true
>>>>>>>
>>>>>>> Its on MacOSX 10.9. I moved the file aside and it behaves
>>>>>>> identically.
>>>>>>>
>>>>>>> Running the git command with the -v switch instead of -q gives the
>>>>>>> following:
>>>>>>>
>>>>>>> $ git clone -v -b metadata-v2 git://github.com/JuliaLang/METADATA.jl
>>>>>>> METADATA
>>>>>>> Cloning into 'METADATA'...
>>>>>>> fatal: unable to connect to github.com:
>>>>>>> github.com[0: 192.30.252.131]: errno=Operation timed out
>>>>>>>
>>>>>>> This is exactly what the -q switch did. There was about a 2 minute
>>>>>>> (90 second) wait after the "Cloning into 'METADATA'..." message. Here's
>>>>>>> what telnet did:
>>>>>>>
>>>>>>> $ telnet github.com 9418
>>>>>>> Trying 192.30.252.130...
>>>>>>> Connected to github.com.
>>>>>>> Escape character is '^]'.
>>>>>>> ^]
>>>>>>> telnet> close
>>>>>>> Connection closed.
>>>>>>>
>>>>>>> I'm using git v2.2.1, and its the MacPorts copy, since MacOSX is so
>>>>>>> funky. I use git daily and it doesn't give me any troubles with
>>>>>>> CloudForge
>>>>>>> or Github (we have another project that uses Github).
>>>>>>>
>>>>>>> Which git is Julia using? If it hard codes a location it could be
>>>>>>> using the MacOSX standard copy in /usr/bin/git (version 1.8.5.2 (Apple
>>>>>>> Git-48)). MacPorts is the one I use in my path, which is at
>>>>>>> /opt/local/bin/git.
>>>>>>>
>>>>>>> I'm not sure why 2-factor auth would be an issue, since cloning is
>>>>>>> anonymous and pretty public??
>>>>>>>
>>>>>>> Thanks for your help...any ideas would be welcome.
>>>>>>>
>>>>>>> -Jeff.
>>>>>>>
>>>>>>> On Thu, Feb 19, 2015 at 4:19 PM, Seth <[email protected]>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> If it turns out to be a git issue then you have to fix the
>>>>>>>> underlying git issue before trying to use git with Julia.
>>>>>>>>
>>>>>>>> Do you have a ~/.gitconfig? What's in it? If you run the git clone
>>>>>>>> with -v instead of -q, what do you see?
>>>>>>>>
>>>>>>>> Just to be clear: this does not appear to be an issue with Julia;
>>>>>>>> it's with (your installation of) git. Fix that and Julia should start
>>>>>>>> working.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Thursday, February 19, 2015 at 1:15:46 PM UTC-8, Jeff Kopmanis
>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>> It's never asked me to authenticate...it just sits there until the
>>>>>>>>> connection times out. I don't do 2-factor auth on my machine, and
>>>>>>>>> not with
>>>>>>>>> github.
>>>>>>>>>
>>>>>>>>> If it turns out to be a git issue, how do I tell Julia to use the
>>>>>>>>> correct/additional options when doing Pkg.?? calls?
>>>>>>>>>
>>>>>>>>> On Thu, Feb 19, 2015 at 4:12 PM, Seth <[email protected]>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> I recall running into this problem with OSX a while ago. Turns
>>>>>>>>>> out it was an interaction between user credentials in .gitconfig and
>>>>>>>>>> 2-factor auth. If that sounds similar to your setup, you might want
>>>>>>>>>> to
>>>>>>>>>> check that git is authenticating you properly at the command line.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Thursday, February 19, 2015 at 12:30:56 PM UTC-8, Jeff
>>>>>>>>>> Kopmanis wrote:
>>>>>>>>>>>
>>>>>>>>>>> I have the exact same problem under OSX. Telnetting to
>>>>>>>>>>> github.com over port 9418 connects just fine. I've tried both
>>>>>>>>>>> the MacPorts install and the binary install from julialang.org
>>>>>>>>>>> with identical (failed) results. I've tried the git command
>>>>>>>>>>> suggested below
>>>>>>>>>>> and the connection fails again. The documentation link everyone
>>>>>>>>>>> keeps
>>>>>>>>>>> pointing us to (https://github.com/julialang/
>>>>>>>>>>> julia#source-download-and-compilation
>>>>>>>>>>> <https://www.google.com/url?q=https%3A%2F%2Fgithub.com%2Fjulialang%2Fjulia%23source-download-and-compilation&sa=D&sntz=1&usg=AFQjCNGWIckzKU-qJB0_oND_fbJtYHITaw>)
>>>>>>>>>>> doesn't address this situation, so please stop referring us to this.
>>>>>>>>>>>
>>>>>>>>>>> I've also tried moving files into /usr/local/shared/julia/site/v0.3
>>>>>>>>>>> to duplicate an install, but that's useless, as it thinks its still
>>>>>>>>>>> in that
>>>>>>>>>>> individual user's directory (there must be some hard coded paths
>>>>>>>>>>> somewhere
>>>>>>>>>>> in the installed packages).
>>>>>>>>>>>
>>>>>>>>>>> What's next, folks?
>>>>>>>>>>>
>>>>>>>>>>> -Jeff. :(
>>>>>>>>>>>
>>>>>>>>>>> On Saturday, August 2, 2014 at 12:34:15 PM UTC-4, Stefan
>>>>>>>>>>> Karpinski wrote:
>>>>>>>>>>>>
>>>>>>>>>>>> Julia is just using the git program, so the problem here must
>>>>>>>>>>>> be with git connecting to github.com over the git protocol.
>>>>>>>>>>>> Can you try doing
>>>>>>>>>>>>
>>>>>>>>>>>> git clone -q -b metadata-v2 git://github.com/JuliaLang/MET
>>>>>>>>>>>> ADATA.jl METADATA
>>>>>>>>>>>>
>>>>>>>>>>>> at the command line? Hopefully you can narrow it down to a
>>>>>>>>>>>> failing case.
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> On Sat, Aug 2, 2014 at 2:56 AM, Shubham Bhushan <
>>>>>>>>>>>> [email protected]> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> I am able to use git protocol there's no problem with that,
>>>>>>>>>>>>> git works out of the box. However somehow julia can't connect to
>>>>>>>>>>>>> github. I
>>>>>>>>>>>>> added julia from the ppa .
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Sat, Aug 2, 2014 at 9:07 AM, Stefan Karpinski <
>>>>>>>>>>>>> [email protected]> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> You are most likely behind a firewall. Can you clone packages
>>>>>>>>>>>>>> from github manually using the git protocol? Can you telnet to
>>>>>>>>>>>>>> github.com on port 9418?
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Fri, Aug 1, 2014 at 5:48 PM, Shubham Bhushan <
>>>>>>>>>>>>>> [email protected]> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> please help I can't add any packages I really really want to
>>>>>>>>>>>>>>> use julia but i can't and the mailing list is terrible. But
>>>>>>>>>>>>>>> still I am
>>>>>>>>>>>>>>> hoping someone will help.
>>>>>>>>>>>>>>> so here's what I am getting
>>>>>>>>>>>>>>> julia> Pkg.init()
>>>>>>>>>>>>>>> INFO: Initializing package repository
>>>>>>>>>>>>>>> /home/shubham/.julia/v0.2
>>>>>>>>>>>>>>> INFO: Cloning METADATA from git://github.com/JuliaLang/MET
>>>>>>>>>>>>>>> ADATA.jl
>>>>>>>>>>>>>>> fatal: unable to connect to github.com:
>>>>>>>>>>>>>>> github.com[0: 192.30.252.131]: errno=Connection timed out
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> ERROR: failed process: Process(`git clone -q -b metadata-v2
>>>>>>>>>>>>>>> git://github.com/JuliaLang/METADATA.jl METADATA`,
>>>>>>>>>>>>>>> ProcessExited(128)) [128]
>>>>>>>>>>>>>>> in pipeline_error at process.jl:476
>>>>>>>>>>>>>>> in run at process.jl:453
>>>>>>>>>>>>>>> in anonymous at no file:43
>>>>>>>>>>>>>>> in cd at file.jl:22
>>>>>>>>>>>>>>> in init at pkg/dir.jl:41
>>>>>>>>>>>>>>> in init at pkg.jl:15
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> please help.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> --
>>>>>>>>>>>>> http://about.me/shubham.bhushan
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Jeff Kopmanis
>>>>>>>>> Monroe Big Band: http://monroebigband.com
>>>>>>>>> Sweet Melissa: http://sweetmelissarocks.com
>>>>>>>>> Soul Kitchen: http://soulkitchencooks.com
>>>>>>>>> Orange Can Astronomy http://orange-can.blogspot.com
>>>>>>>>> Pickle Reviews http://pickle-review.blogspot.com
>>>>>>>>> Saxessories http://saxessories.blogspot.com
>>>>>>>>> ** Go Green and leave this email on the Screen! **
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Jeff Kopmanis
>>>>>>> Monroe Big Band: http://monroebigband.com
>>>>>>> Sweet Melissa: http://sweetmelissarocks.com
>>>>>>> Soul Kitchen: http://soulkitchencooks.com
>>>>>>> Orange Can Astronomy http://orange-can.blogspot.com
>>>>>>> Pickle Reviews http://pickle-review.blogspot.com
>>>>>>> Saxessories http://saxessories.blogspot.com
>>>>>>> ** Go Green and leave this email on the Screen! **
>>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Jeff Kopmanis
>>>>> Monroe Big Band: http://monroebigband.com
>>>>> Sweet Melissa: http://sweetmelissarocks.com
>>>>> Soul Kitchen: http://soulkitchencooks.com
>>>>> Orange Can Astronomy http://orange-can.blogspot.com
>>>>> Pickle Reviews http://pickle-review.blogspot.com
>>>>> Saxessories http://saxessories.blogspot.com
>>>>> ** Go Green and leave this email on the Screen! **
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Jeff Kopmanis
>>>> Monroe Big Band: http://monroebigband.com
>>>> Sweet Melissa: http://sweetmelissarocks.com
>>>> Soul Kitchen: http://soulkitchencooks.com
>>>> Orange Can Astronomy http://orange-can.blogspot.com
>>>> Pickle Reviews http://pickle-review.blogspot.com
>>>> Saxessories http://saxessories.blogspot.com
>>>> ** Go Green and leave this email on the Screen! **
>>>>
>>>
>>
>>
>> --
>> Jeff Kopmanis
>> Monroe Big Band: http://monroebigband.com
>> Sweet Melissa: http://sweetmelissarocks.com
>> Soul Kitchen: http://soulkitchencooks.com
>> Orange Can Astronomy http://orange-can.blogspot.com
>> Pickle Reviews http://pickle-review.blogspot.com
>> Saxessories http://saxessories.blogspot.com
>> ** Go Green and leave this email on the Screen! **
>>
>
--
Jeff Kopmanis
Monroe Big Band: http://monroebigband.com
Sweet Melissa: http://sweetmelissarocks.com
Soul Kitchen: http://soulkitchencooks.com
Orange Can Astronomy http://orange-can.blogspot.com
Pickle Reviews http://pickle-review.blogspot.com
Saxessories http://saxessories.blogspot.com
** Go Green and leave this email on the Screen! **
