I got it working. Thanks so much for your help! I tried your two suggestions, and it still gave me that error. So I grep'ed through the julia directory and found a bunch of 'Makefile' files inside the deps folder that were using the "cp" command with a "-a" flag set. I deleted any "-a" flag I could find and also put a "-" symbol in front of cp commands that had the "-p" flag set. After that the install worked (well the BLAS library failed but gave some pretty clear suggestions on re-running make with other flags set, which then worked).
So thanks again, I really appreciate it, Garrett On Monday, June 29, 2015 at 1:04:25 PM UTC-5, Tony Kelman wrote: > > Hm, okay, I guess this isn't one I've seen before. Try editing the > top-level Makefile, find the install: rule and see if you can add a - at > the start of one of the lines to allow moving past the error. I suspect > it's the loop over JL_PRIVATE_LIBS that's failing. You could also try > modifying some of the cp flags in contrib/install.sh. > > > On Monday, June 29, 2015 at 1:28:52 PM UTC-4, Garrett Jenkinson wrote: >> >> Thanks for the suggestion. I tried your suggestion and got the same error >> message as before. >> >> As a note, even though this is being done on a computing cluster, I >> logged into a single compute node and am not using the -j N flag to do >> parallel make. I am simply running the normal make command without any >> flags, and so I think everything should be acting serially as though I was >> just on a normal computer. >> >> >> >> On Monday, June 29, 2015 at 12:08:11 PM UTC-5, Tony Kelman wrote: >>> >>> I'm guessing, but this might be due to some fragility with parallel make >>> in the deps/Makefile on the release-0.3 branch. You can try make -C deps >>> distclean-openlibm && make cleanall && make, see if things work better a >>> second time around (cleanall does not clear out the large dependencies like >>> llvm and openblas, so this shouldn't take too long). >>> >>> >>> On Monday, June 29, 2015 at 11:35:07 AM UTC-4, Garrett Jenkinson wrote: >>>> >>>> I am trying to install 0.3.10 from source on a RHEL 6.5 cluster, but >>>> keep getting an error. Here are the commands I used: >>>> >>>> mkdir julia >>>> ls >>>> cd julia/ >>>> git clone git://github.com/JuliaLang/julia.git >>>> git checkout release-0.3 >>>> make >>>> >>>> This fails with the error: >>>> >>>> cp: preserving permissions for >>>> `~/julia/julia/usr/lib/libopenlibm.so.1.0': Operation not supported >>>> make[3]: *** [install] Error 1 >>>> make[2]: *** [~/julia/julia/usr/lib/libopenlibm.a] Error 2 >>>> make[1]: *** [julia-release] Error 2 >>>> make: *** [release] Error 2 >>>> >>>> where I have replaced my directory structure (that has username >>>> details, etc) with "~" in the above error message. Here is the file >>>> permissions of the libopenlibm.so.1.0: >>>> >>>> -rwxr-xr-x+ >>>> >>>> It seems that the error is related to the ACL permissions (+ sign at >>>> end of permissions). I tried various setfacl commands (using -b and -k >>>> flags) to see if I could remove these acl permissions, but it does not >>>> correct the problem. Also, if it is relevant, I do not have root >>>> permissions on this machine since it is a computing cluster. >>>> >>>> Am I doing something wrong? Any thoughts on correcting this? >>>> >>>> Thanks, >>>> Garrett >>>> >>>> P.S. Here are my gcc specs (since I know you need the updated compiler, >>>> which I have): >>>> >>>> gcc -v >>>> Using built-in specs. >>>> COLLECT_GCC=gcc >>>> >>>> COLLECT_LTO_WRAPPER=/cm/shared/apps/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/lto-wrapper >>>> Target: x86_64-unknown-linux-gnu >>>> Configured with: ../gcc-4.8.1/configure >>>> --prefix=/cm/shared/apps/gcc/4.8.1 --enable-languages=c,c++,fortran >>>> --with-gmp-include=/usr/src/redhat/BUILD/gcc-4.8.1-obj/../gcc-4.8.1/our-gmp >>>> >>>> --with-gmp-lib=/usr/src/redhat/BUILD/gcc-4.8.1-obj/../gcc-4.8.1/our-gmp >>>> --with-mpc-include=/usr/src/redhat/BUILD/gcc-4.8.1-obj/../gcc-4.8.1/our-mpc/src >>>> >>>> --with-mpc-lib=/usr/src/redhat/BUILD/gcc-4.8.1-obj/../gcc-4.8.1/our-mpc/src/.libs >>>> >>>> --with-mpfr-include=/usr/src/redhat/BUILD/gcc-4.8.1-obj/../gcc-4.8.1/our-mpfr/src >>>> >>>> --with-mpfr-lib=/usr/src/redhat/BUILD/gcc-4.8.1-obj/../gcc-4.8.1/our-mpfr/src/.libs >>>> Thread model: posix >>>> gcc version 4.8.1 (GCC) >>>> >>>>
