You could try Pkg.rm("HDF5") and then delete the HDF5 directory in
~/.julia/.cache.
--Tim
On Tuesday, July 21, 2015 06:45:55 PM Roger Herikstad wrote:
> Hm, just tried Pkg.update() on 0.4.0-dev+5955 and I got the new version of
> HDF5 without any problems, so there's probably something wonky going on
> with Pkg on my 0.3.10.
> Is there anything I can do to try and reset Pkg, short of nuking my whole
> ~/.julia/v0.3 directory and starting over?
>
> On Tue, Jul 21, 2015 at 6:38 PM, Tim Holy <tim.h...@gmail.com> wrote:
> > Strange. That commit is present in the repository: see
> > https://github.com/timholy/HDF5.jl/commits/master
> > Anyone else having the same problem?
> >
> > I just did this and it went off without a hitch (julia-old is my
> > installation
> > of the 0.3 release):
> > $ mkdir /tmp/packages
> > $ JULIA_PKGDIR=/tmp/packages julia-old
> >
> > _
> >
> > _ _ _(_)_ | A fresh approach to technical computing
> >
> > (_) | (_) (_) | Documentation: http://docs.julialang.org
> >
> > _ _ _| |_ __ _ | Type "help()" for help.
> >
> > | | | | | | |/ _` | |
> > | | |
> > | | |_| | | | (_| | | Version 0.3.7-pre+1 (2015-02-17 22:12 UTC)
> >
> > _/ |\__'_|_|_|\__'_| | Commit d15f183* (153 days old release-0.3)
> >
> > |__/ | x86_64-linux-gnu
> >
> > julia> Pkg.init()
> > INFO: Initializing package repository /tmp/packages/v0.3
> > INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl
> >
> > julia> Pkg.add("HDF5")
> > INFO: Cloning cache of BinDeps from git://
> > github.com/JuliaLang/BinDeps.jl.git
> > INFO: Cloning cache of Blosc from git://github.com/stevengj/Blosc.jl.git
> > INFO: Cloning cache of Compat from git://
> > github.com/JuliaLang/Compat.jl.git
> > INFO: Cloning cache of HDF5 from git://github.com/timholy/HDF5.jl.git
> > INFO: Cloning cache of SHA from git://github.com/staticfloat/SHA.jl.git
> > INFO: Cloning cache of URIParser from
> > git://github.com/JuliaWeb/URIParser.jl.git
> > INFO: Installing BinDeps v0.3.14
> > INFO: Installing Blosc v0.1.2
> > INFO: Installing Compat v0.4.9
> > INFO: Installing HDF5 v0.5.0
> > INFO: Installing SHA v0.0.4
> > INFO: Installing URIParser v0.0.5
> > INFO: Building Blosc
> >
> > % Total % Received % Xferd Average Speed Time Time Time
> >
> > Current
> >
> > Dload Upload Total Spent Left
> >
> > Speed
> > 100 121 0 121 0 0 553 0 --:--:-- --:--:-- --:--:--
> >
> > 555
> >
> > 0 0 0 233k 0 0 221k 0 --:--:-- 0:00:01 --:--:--
> >
> > 427k
> > Compiling libblosc...
> >
> > CC blosc.c
> > CC blosclz.c
> > CC shuffle.c
> > LINK libblosc
> >
> > INFO: Building HDF5
> > INFO: Package database updated
> >
> > julia>
> >
> > which went like a charm. Maybe try Pkg.update()?
> >
> > --Tim
> >
> > On Monday, July 20, 2015 10:36:25 PM Roger Herikstad wrote:
> > > Hi,
> > >
> > > For some reason I am unable to add HDF5. Not sure if this is related to
> > >
> > > the recent change splitting JLD off into its own package. This is the
> >
> > error
> >
> > > I got
> > >
> > > ulia> Pkg.add("HDF5")
> > > INFO: Updating cache of HDF5...
> >
> > > ERROR: Missing package versions (possible metadata misconfiguration):
> > HDF5
> >
> > > v(nothing,v"0.5.0") [883165af1cef09980a3d9b1718477579d629754c[1:10]]
> > >
> > > in wait at
> >
> > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > ia>
> > > /sys.dylib (repeats 2 times)
> > >
> > > in wait at task.jl:48
> > > in sync_end at
> >
> > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > ia>
> > > /sys.dylib in add at pkg/entry.jl:319
> > >
> > > in add at pkg/entry.jl:71
> > > in anonymous at pkg/dir.jl:28
> > > in cd at
> >
> > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > ia>
> > > /sys.dylib in __cd#229__ at
> >
> > /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > ia>
> > > /sys.dylib in add at pkg.jl:20
> > >
> > > This is my versioninfo:
> > >
> > > julia> versioninfo()
> > > Julia Version 0.3.10
> > > Commit c8ceeef* (2015-06-24 13:54 UTC)
> > >
> > > Platform Info:
> > > System: Darwin (x86_64-apple-darwin13.4.0)
> > > CPU: Intel(R) Xeon(R) CPU X5472 @ 3.00GHz
> > > WORD_SIZE: 64
> > > BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Penryn)
> > > LAPACK: libopenblas
> > > LIBM: libopenlibm
> > > LLVM: libLLVM-3.3
> > >
> > > I appreciate any advice on what the problem might be. Thanks!
