Ah, of course. Thanks! It works now. Sorry for the noise.
On Tue, Jul 21, 2015 at 6:51 PM, Tim Holy <[email protected]> wrote:
> You could try Pkg.rm("HDF5") and then delete the HDF5 directory in
> ~/.julia/.cache.
>
> --Tim
>
> On Tuesday, July 21, 2015 06:45:55 PM Roger Herikstad wrote:
> > Hm, just tried Pkg.update() on 0.4.0-dev+5955 and I got the new version
> of
> > HDF5 without any problems, so there's probably something wonky going on
> > with Pkg on my 0.3.10.
> > Is there anything I can do to try and reset Pkg, short of nuking my whole
> > ~/.julia/v0.3 directory and starting over?
> >
> > On Tue, Jul 21, 2015 at 6:38 PM, Tim Holy <[email protected]> wrote:
> > > Strange. That commit is present in the repository: see
> > > https://github.com/timholy/HDF5.jl/commits/master
> > > Anyone else having the same problem?
> > >
> > > I just did this and it went off without a hitch (julia-old is my
> > > installation
> > > of the 0.3 release):
> > > $ mkdir /tmp/packages
> > > $ JULIA_PKGDIR=/tmp/packages julia-old
> > >
> > > _
> > >
> > > _ _ _(_)_ | A fresh approach to technical computing
> > >
> > > (_) | (_) (_) | Documentation: http://docs.julialang.org
> > >
> > > _ _ _| |_ __ _ | Type "help()" for help.
> > >
> > > | | | | | | |/ _` | |
> > > | | |
> > > | | |_| | | | (_| | | Version 0.3.7-pre+1 (2015-02-17 22:12 UTC)
> > >
> > > _/ |\__'_|_|_|\__'_| | Commit d15f183* (153 days old release-0.3)
> > >
> > > |__/ | x86_64-linux-gnu
> > >
> > > julia> Pkg.init()
> > > INFO: Initializing package repository /tmp/packages/v0.3
> > > INFO: Cloning METADATA from git://github.com/JuliaLang/METADATA.jl
> > >
> > > julia> Pkg.add("HDF5")
> > > INFO: Cloning cache of BinDeps from git://
> > > github.com/JuliaLang/BinDeps.jl.git
> > > INFO: Cloning cache of Blosc from git://
> github.com/stevengj/Blosc.jl.git
> > > INFO: Cloning cache of Compat from git://
> > > github.com/JuliaLang/Compat.jl.git
> > > INFO: Cloning cache of HDF5 from git://github.com/timholy/HDF5.jl.git
> > > INFO: Cloning cache of SHA from git://
> github.com/staticfloat/SHA.jl.git
> > > INFO: Cloning cache of URIParser from
> > > git://github.com/JuliaWeb/URIParser.jl.git
> > > INFO: Installing BinDeps v0.3.14
> > > INFO: Installing Blosc v0.1.2
> > > INFO: Installing Compat v0.4.9
> > > INFO: Installing HDF5 v0.5.0
> > > INFO: Installing SHA v0.0.4
> > > INFO: Installing URIParser v0.0.5
> > > INFO: Building Blosc
> > >
> > > % Total % Received % Xferd Average Speed Time Time Time
> > >
> > > Current
> > >
> > > Dload Upload Total Spent Left
> > >
> > > Speed
> > > 100 121 0 121 0 0 553 0 --:--:-- --:--:--
> --:--:--
> > >
> > > 555
> > >
> > > 0 0 0 233k 0 0 221k 0 --:--:-- 0:00:01
> --:--:--
> > >
> > > 427k
> > > Compiling libblosc...
> > >
> > > CC blosc.c
> > > CC blosclz.c
> > > CC shuffle.c
> > > LINK libblosc
> > >
> > > INFO: Building HDF5
> > > INFO: Package database updated
> > >
> > > julia>
> > >
> > > which went like a charm. Maybe try Pkg.update()?
> > >
> > > --Tim
> > >
> > > On Monday, July 20, 2015 10:36:25 PM Roger Herikstad wrote:
> > > > Hi,
> > > >
> > > > For some reason I am unable to add HDF5. Not sure if this is
> related to
> > > >
> > > > the recent change splitting JLD off into its own package. This is the
> > >
> > > error
> > >
> > > > I got
> > > >
> > > > ulia> Pkg.add("HDF5")
> > > > INFO: Updating cache of HDF5...
> > >
> > > > ERROR: Missing package versions (possible metadata misconfiguration):
> > > HDF5
> > >
> > > > v(nothing,v"0.5.0") [883165af1cef09980a3d9b1718477579d629754c[1:10]]
> > > >
> > > > in wait at
> > >
> > >
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > > ia>
> > > > /sys.dylib (repeats 2 times)
> > > >
> > > > in wait at task.jl:48
> > > > in sync_end at
> > >
> > >
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > > ia>
> > > > /sys.dylib in add at pkg/entry.jl:319
> > > >
> > > > in add at pkg/entry.jl:71
> > > > in anonymous at pkg/dir.jl:28
> > > > in cd at
> > >
> > >
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > > ia>
> > > > /sys.dylib in __cd#229__ at
> > >
> > >
> /home/roger/Applications/Julia-0.3.10.app/Contents/Resources/julia/lib/jul
> > > ia>
> > > > /sys.dylib in add at pkg.jl:20
> > > >
> > > > This is my versioninfo:
> > > >
> > > > julia> versioninfo()
> > > > Julia Version 0.3.10
> > > > Commit c8ceeef* (2015-06-24 13:54 UTC)
> > > >
> > > > Platform Info:
> > > > System: Darwin (x86_64-apple-darwin13.4.0)
> > > > CPU: Intel(R) Xeon(R) CPU X5472 @ 3.00GHz
> > > > WORD_SIZE: 64
> > > > BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Penryn)
> > > > LAPACK: libopenblas
> > > > LIBM: libopenlibm
> > > > LLVM: libLLVM-3.3
> > > >
> > > > I appreciate any advice on what the problem might be. Thanks!
>
>
--
~ Roger
