Just bumping this to note that functionality for PDB parsing is now included in BioJulia: https://github.com/BioJulia/Bio.jl
With some docs here: https://github.com/BioJulia/Bio.jl/blob/master/doc/structure.ipynb I am interested to hear feedback on the module and ideas for future development. Thanks! On Thursday, 21 May 2015 20:50:50 UTC+1, jonny brooks wrote: > > Thanks very much. The PdbTool does almost what I need it to but it needs > an extra bit parsed for the unit cell parameters and the symmetry > operators. I may add some more to the package when I get round to working > on it. > > I've had a brief look at your library. It looks awesome. I look forward to > when you wrap it to Julia. Looks like something that would be useful to me. > Keep up the good work :) > > On 21 May 2015 at 17:47, Luthaf <[email protected] <javascript:>> wrote: > >> I have found this, which is not an official package : >> https://github.com/christophfeinauer/PdbTool.jl >> >> Also, I am currently writing a cross-language chemistry files reader >> library (https://github.com/Luthaf/Chemharp/), and I should wrap it to >> Julia soon (this means 2-3 months maximum). It will support PDB file >> through the VMD molfile plugins, but it will not be native Julia. >> >> Regards, >> Guillaume >> >> jonny brooks a écrit: >> >> >> Hey Diego, >> >> Did anything ever come of this? I would like to parse a pdb file with >> julia but there are a real lack of crystallographic/structural biology >> libraries for julia. >> >> Have you written something to read pdb files in native julia? >> >> >
