Hi! Finally, I have a PDB and PDBML (xml) parser in the *PDB module* of *MIToS <https://github.com/diegozea/MIToS.jl> *(the *documentation* is in *http://mitos.leloir.org.ar* <http://mitos.leloir.org.ar/>).
Best, El lunes, 14 de marzo de 2016, 15:49:44 (UTC-3), Joe Greener escribió: > > Just bumping this to note that functionality for PDB parsing is now > included in BioJulia: > https://github.com/BioJulia/Bio.jl > > With some docs here: > https://github.com/BioJulia/Bio.jl/blob/master/doc/structure.ipynb > > I am interested to hear feedback on the module and ideas for future > development. Thanks! > > > On Thursday, 21 May 2015 20:50:50 UTC+1, jonny brooks wrote: >> >> Thanks very much. The PdbTool does almost what I need it to but it needs >> an extra bit parsed for the unit cell parameters and the symmetry >> operators. I may add some more to the package when I get round to working >> on it. >> >> I've had a brief look at your library. It looks awesome. I look forward >> to when you wrap it to Julia. Looks like something that would be useful to >> me. Keep up the good work :) >> >> On 21 May 2015 at 17:47, Luthaf <[email protected]> wrote: >> >>> I have found this, which is not an official package : >>> https://github.com/christophfeinauer/PdbTool.jl >>> >>> Also, I am currently writing a cross-language chemistry files reader >>> library (https://github.com/Luthaf/Chemharp/), and I should wrap it to >>> Julia soon (this means 2-3 months maximum). It will support PDB file >>> through the VMD molfile plugins, but it will not be native Julia. >>> >>> Regards, >>> Guillaume >>> >>> jonny brooks a écrit: >>> >>> >>> Hey Diego, >>> >>> Did anything ever come of this? I would like to parse a pdb file with >>> julia but there are a real lack of crystallographic/structural biology >>> libraries for julia. >>> >>> Have you written something to read pdb files in native julia? >>> >>> >>
