I'm using bokeh to generate interactive visualizations and I want to 
pre-render / execute the notebooks I programmatically generate using 
"jupyter nbconvert --to notebook --execute notebook1.ipynb --output 
notebook1_output.ipynb". Although it seems it executes the cells but the 
outputs from JS powered visualizations are not stored in the executed 
notebook file and manual execution is required on the browser.

Is there a way to keep such outputs in the notebook files programmatically 
through Terminal?

We had some discussion on bokeh forums please have a look at it 


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