Hi Thomas,

It makes sense, thanks for the tips I'll try a headless browser

Best
Gungor

On Tuesday, August 8, 2017 at 1:40:03 PM UTC+3, takowl wrote:
>
> Hi Güngör,
>
> Their speculation in the later part of that thread is essentially correct. 
> Nbconvert runs your Python code and produces the output, which from 
> Jupyter's point of view is the Javascript Bokeh sends to produce the plots. 
> That Javascript runs when you open the file in your browser, but at that 
> point the Bokeh backend it needs to talk to is gone, so it can't display 
> the plot.
>
> If you need Javascript to execute while the kernel is running, you'll need 
> to run it in a browser. Depending on your use case, that could mean 
> automating a headless browser (using e.g. Selenium), or some extra 
> Javascript running in a regular browser.
>
> Thomas
>
> On 8 August 2017 at 08:17, Güngör Budak <gng...@gmail.com <javascript:>> 
> wrote:
>
>> Hi,
>>
>> I'm using bokeh to generate interactive visualizations and I want to 
>> pre-render / execute the notebooks I programmatically generate using 
>> "jupyter nbconvert --to notebook --execute notebook1.ipynb --output 
>> notebook1_output.ipynb". Although it seems it executes the cells but the 
>> outputs from JS powered visualizations are not stored in the executed 
>> notebook file and manual execution is required on the browser.
>>
>> Is there a way to keep such outputs in the notebook files 
>> programmatically through Terminal?
>>
>> We had some discussion on bokeh forums please have a look at it 
>> <https://groups.google.com/a/continuum.io/forum/#!topic/bokeh/vFCPyLSzlRA>
>> .
>>
>> Best
>> Gungor
>>
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