Hi all, Can anyone reply to my question?
Thanks ---------- Forwarded message ---------- From: Josep Morer Mu?oz <[email protected]> Date: 2010/6/28 Subject: How to pass String and File Parameters using Command Line To: Kepler Users <kepler-users at kepler-project.org> Hi all, I am having problems when I try to execute a KAR using the command line with String and File Parameters. As I understand, when a parameter is a number, you put -parameter 2 f.e and if it is a string or a file path, you put -parameter "string". However, for string and file parameters does not work because I am having errors like this: urops at ubuntu:~/KeplerLastVersion$ ./kepler.sh -runwf -nogui -stepsrmsd 42 -ExecutionId 35 -namejob 'SEPT09' -numclustersrmsd 5 /home/urops/CBI/Projectes/2/Execucions/35/KeplerMDAnalyser-Module1-RMSD-CBI[0].kar [null] /home/urops/KeplerLastVersion [null] Found OS Extension file: /home/urops/KeplerLastVersion/apple-extensions/module-info/osextension.txt [null] Ran additional initialization for module gui from class org.kepler.module.gui.Initialize [null] Ran additional initialization for module tagging from class org.kepler.module.tagging.Initialize [null] Ran additional initialization for module provenance from class org.kepler.module.provenance.Initialize [null] common tabpane configuration overridden by workflow-run-manager [null] Ran additional initialization for module workflowrunmanager from class org.kepler.module.workflowrunmanager.Initialize [null] common tabpane configuration overridden by reporting [null] Ran additional initialization for module reporting from class org.kepler.module.reporting.Initialize [null] loading: org.kepler.KeplerConfigurationApplication args: ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 -ExecutionId 35 -namejob SEPT09 -numclustersrmsd [null] invoking: org.kepler.KeplerConfigurationApplication.main [null] Kepler Initializing... [null] Command failed [null] java.lang.Exception: Failed to parse "ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 -ExecutionId 35 -namejob SEPT09 -numclustersrmsd" [null] at ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:651) [null] at org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:288) [null] at org.kepler.KeplerConfigurationApplication.main(KeplerConfigurationApplication.java:582) [null] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [null] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) [null] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [null] at java.lang.reflect.Method.invoke(Method.java:616) [null] at org.kepler.Kepler.load(Kepler.java:362) [null] at org.kepler.Kepler.load(Kepler.java:380) [null] at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308) [null] at org.kepler.Kepler.main(Kepler.java:210) [null] Caused by: ptolemy.kernel.util.IllegalActionException: Cannot set parameter -numclustersrmsd when no value is given. [null] at org.kepler.KeplerConfigurationApplication.parseArgs(KeplerConfigurationApplication.java:308) [null] at org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:193) [null] ... 9 more [null] java.lang.Exception: Failed to parse "ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 -ExecutionId 35 -namejob SEPT09 -numclustersrmsd" [null] at ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:651) [null] at org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:288) [null] at org.kepler.KeplerConfigurationApplication.main(KeplerConfigurationApplication.java:582) [null] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [null] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) [null] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [null] at java.lang.reflect.Method.invoke(Method.java:616) [null] at org.kepler.Kepler.load(Kepler.java:362) [null] at org.kepler.Kepler.load(Kepler.java:380) [null] at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308) [null] at org.kepler.Kepler.main(Kepler.java:210) [null] Caused by: ptolemy.kernel.util.IllegalActionException: Cannot set parameter -numclustersrmsd when no value is given. [null] at org.kepler.KeplerConfigurationApplication.parseArgs(KeplerConfigurationApplication.java:308) [null] at org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:193) [null] ... 9 more Exception in thread "main" Java returned: 1 at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:105) at org.kepler.build.runner.Kepler.main(Kepler.java:78) Caused by: Java returned: 1 at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108) at org.kepler.build.Run.runSuite(Run.java:298) at org.kepler.build.Run.run(Run.java:202) at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101) ... 1 more --- Nested Exception --- Java returned: 1 at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108) at org.kepler.build.Run.runSuite(Run.java:298) at org.kepler.build.Run.run(Run.java:202) at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101) at org.kepler.build.runner.Kepler.main(Kepler.java:78) I get this error when I try to pass a String or File parameter with "". Any idea? Thanks -- Josep -- Josep -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-users/attachments/20100713/9fe97323/attachment.html>
