Hi Derik, Attached the KAR. This workflow also needs a custom actor that executes a Perl script. I have also attached it.
Thanks for your help 2010/7/14 Derik Barseghian <barseghian at nceas.ucsb.edu> > Hi Josep, > I'm unable to replicate this problem. I've created a simple workflow and > tried: > > ./kepler.sh -runwf -nogui -ExecutionId 77 -namejob 'SEPT09' -anotherVar 66 > /Users/derik/KeplerData/workflows/MyWorkflows/testwf\[0\].kar > > and this works for me. I've set keepResultantRunKars true in reporting's > configuration.xml, and I'm seeing the result kar in workflow-runs, and it > looks good. I'm at kepler revision 25100. Are you able to send me your kar > to test? > > Derik > > > On Jul 13, 2010, at 1:31 PM, Josep Morer Mu?oz wrote: > > Hi all, >> >> Can anyone reply to my question? >> >> Thanks >> >> ---------- Forwarded message ---------- >> From: Josep Morer Mu?oz <josep.morer at gmail.com> >> Date: 2010/6/28 >> Subject: How to pass String and File Parameters using Command Line >> To: Kepler Users <kepler-users at kepler-project.org> >> >> >> Hi all, >> >> I am having problems when I try to execute a KAR using the command line >> with String and File Parameters. As I understand, when a parameter is a >> number, you put -parameter 2 f.e and if it is a string or a file path, you >> put -parameter "string". However, for string and file parameters does not >> work because I am having errors like this: >> >> urops at ubuntu:~/KeplerLastVersion$ ./kepler.sh -runwf -nogui -stepsrmsd >> 42 -ExecutionId 35 -namejob 'SEPT09' -numclustersrmsd 5 >> /home/urops/CBI/Projectes/2/Execucions/35/KeplerMDAnalyser-Module1-RMSD-CBI[0].kar >> [null] /home/urops/KeplerLastVersion >> [null] Found OS Extension file: >> /home/urops/KeplerLastVersion/apple-extensions/module-info/osextension.txt >> [null] Ran additional initialization for module gui from class >> org.kepler.module.gui.Initialize >> [null] Ran additional initialization for module tagging from class >> org.kepler.module.tagging.Initialize >> [null] Ran additional initialization for module provenance from class >> org.kepler.module.provenance.Initialize >> [null] common tabpane configuration overridden by workflow-run-manager >> [null] Ran additional initialization for module workflowrunmanager >> from class org.kepler.module.workflowrunmanager.Initialize >> [null] common tabpane configuration overridden by reporting >> [null] Ran additional initialization for module reporting from class >> org.kepler.module.reporting.Initialize >> [null] loading: org.kepler.KeplerConfigurationApplication args: >> ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 >> -ExecutionId 35 -namejob SEPT09 -numclustersrmsd >> [null] invoking: org.kepler.KeplerConfigurationApplication.main >> [null] Kepler Initializing... >> [null] Command failed >> [null] java.lang.Exception: Failed to parse >> "ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 >> -ExecutionId 35 -namejob SEPT09 -numclustersrmsd" >> [null] at >> ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:651) >> [null] at >> org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:288) >> [null] at >> org.kepler.KeplerConfigurationApplication.main(KeplerConfigurationApplication.java:582) >> [null] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native >> Method) >> [null] at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> [null] at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> [null] at java.lang.reflect.Method.invoke(Method.java:616) >> [null] at org.kepler.Kepler.load(Kepler.java:362) >> [null] at org.kepler.Kepler.load(Kepler.java:380) >> [null] at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308) >> [null] at org.kepler.Kepler.main(Kepler.java:210) >> [null] Caused by: ptolemy.kernel.util.IllegalActionException: Cannot >> set parameter -numclustersrmsd when no value is given. >> [null] at >> org.kepler.KeplerConfigurationApplication.parseArgs(KeplerConfigurationApplication.java:308) >> [null] at >> org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:193) >> [null] ... 9 more >> [null] java.lang.Exception: Failed to parse >> "ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42 >> -ExecutionId 35 -namejob SEPT09 -numclustersrmsd" >> [null] at >> ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:651) >> [null] at >> org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:288) >> [null] at >> org.kepler.KeplerConfigurationApplication.main(KeplerConfigurationApplication.java:582) >> [null] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native >> Method) >> [null] at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> [null] at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> [null] at java.lang.reflect.Method.invoke(Method.java:616) >> [null] at org.kepler.Kepler.load(Kepler.java:362) >> [null] at org.kepler.Kepler.load(Kepler.java:380) >> [null] at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308) >> [null] at org.kepler.Kepler.main(Kepler.java:210) >> [null] Caused by: ptolemy.kernel.util.IllegalActionException: Cannot >> set parameter -numclustersrmsd when no value is given. >> [null] at >> org.kepler.KeplerConfigurationApplication.parseArgs(KeplerConfigurationApplication.java:308) >> [null] at >> org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:193) >> [null] ... 9 more >> Exception in thread "main" Java returned: 1 >> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:105) >> at org.kepler.build.runner.Kepler.main(Kepler.java:78) >> Caused by: Java returned: 1 >> at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108) >> at org.kepler.build.Run.runSuite(Run.java:298) >> at org.kepler.build.Run.run(Run.java:202) >> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101) >> ... 1 more >> --- Nested Exception --- >> Java returned: 1 >> at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108) >> at org.kepler.build.Run.runSuite(Run.java:298) >> at org.kepler.build.Run.run(Run.java:202) >> at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101) >> at org.kepler.build.runner.Kepler.main(Kepler.java:78) >> >> I get this error when I try to pass a String or File parameter with "". >> Any idea? >> >> Thanks >> -- >> Josep >> >> >> >> -- >> Josep >> _______________________________________________ >> Kepler-users mailing list >> Kepler-users at kepler-project.org >> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users >> > > ---------- > Derik Barseghian > http://nceas.ucsb.edu/ecoinfo | office: 805-893-5127 > Rm 3411, Marine Science Research Building, UCSB > Santa Barbara, CA, 93106-6150 > > -- Josep -------------- next part -------------- An HTML attachment was scrubbed... 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