Dear all, 

I am trying to make an armchair nanoribbon as following: 


import kwant 
from math import sqrt 
import matplotlib.pyplot as plt 
import tinyarray 
import numpy as np 
import math 
import cmath 
#import scipy.linalg as la 
import matplotlib 
d=1.42; 
a1=d*math.sqrt(3); 

#on-site energy................................................... 
t=-2.7; 

latt = kwant.lattice.general([(0,a1),(a1*math.sqrt(3)/2,a1*0.5)], 
[(-d/2,a1/2),(d/2,a1/2)]) 
a,b = latt.sublattices 
syst= kwant.Builder() 


def rectangle(pos): 
x, y = pos 
return -2.4*a1<x<2.4*a1 and -3*d<y<3*d 


syst[latt.shape(rectangle, (1,1))]=0 



#nearest neighbors............................................................. 
syst[[kwant.builder.HoppingKind((0,0),a,b)]] =t 
syst[[kwant.builder.HoppingKind((0,1),a,b)]] =t 
syst[[kwant.builder.HoppingKind((-1,1),a,b)]] =t 

ax=kwant.plot(syst); 

sym = kwant.TranslationalSymmetry(latt.vec((-1,2))) 

lead = kwant.Builder(sym) 

def lead_shape(pos): 
x, y = pos 
return -3*d<y<3*d 

lead[latt.shape(lead_shape, (1,1))]=0 


lead[[kwant.builder.HoppingKind((0,0),a,b)]]=t 
lead[[kwant.builder.HoppingKind((0,1),a,b)]]=t 
lead[[kwant.builder.HoppingKind((-1,1),a,b)]]=t 

syst.attach_lead(lead,add_cells=0) 
syst.attach_lead(lead.reversed(),add_cells=0) 
ax=kwant.plot(syst); 


It is ok and I have no problem with it. I have problem when I tried to make a 
defect (like making a hole) on the scattering rigion and also lead. 


I used a same method for making a defect on both scattering region and lead but 
the results are not same. 


Would you please help me what is a problem. Would you please let me know if 
symmetry vector (sym = kwant.TranslationalSymmetry(latt.vec((-1,2)))) 


used is ok? 


Best wishes, 


Sajad 

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