On Mon, Mar 14, 2011 at 11:03 AM, Roy Stogner <[email protected]> wrote:
>
> On Mon, 14 Mar 2011, Boyce Griffith wrote:
>
>> OK, it looks like this was introduced in r4248.
>
> Wait: r4248, the revision that moved
> libmesh_assert_valid_parallel_ids() to MeshBase??  The default
> implementation of that is "{}"; how on earth should that be giving us
> a segfault?
>
> Wait, weirder than that:  The only places ever calling that changed
> code are in MeshRefinement and InfElemBuilder... and your test example
> doesn't even indirectly use either!
>
> I have no idea what could be going on here.

Me neither, other than we might have had a bug lurking for years and
some slight change somewhere triggered it.  Undefined behavior and all
that...

I can confirm that Boyce's example runs for me in 4247, and segfaults in 4248.

My backtrace is a bit different than his, it doesn't get down into the
iterators at all:

(gdb) bt
#0  0x00007fff85bfcfca in __semwait_signal ()
#1  0x00007fff85bfce59 in nanosleep ()
#2  0x00007fff85c49df0 in sleep ()
#3  0x00000001002e8898 in PetscSleep () at mesh.h:72
#4  0x00000001002c4e64 in PetscAttachDebugger () at mesh.h:72
#5  0x00000001002c4ee5 in PetscAttachDebuggerErrorHandler () at mesh.h:72
#6  0x00000001002c580e in PetscError () at mesh.h:72
#7  0x00000001002c8f10 in PetscDefaultSignalHandler () at mesh.h:72
#8  0x00000001002c8fc5 in PetscSignalHandler_Private () at mesh.h:72
#9  <signal handler called>
#10 0x0000000100ab2d8c in libMesh::UnstructuredMesh::find_neighbors
(this=0x7fff5fbfed10, reset_remote_elements=false,
reset_current_list=true) at src/mesh/unstructured_mesh.C:201
#11 0x00000001009906d3 in libMesh::MeshBase::prepare_for_use
(this=0x7fff5fbfed10, skip_renumber_nodes_and_elements=false) at
src/mesh/mesh_base.C:98
#12 0x00000001009e3186 in libMesh::MeshTools::Generation::build_cube
(mesh=@0x7fff5fbfed10, nx=2, ny=2, nz=0, xmin=0, xmax=1, ymin=0,
ymax=1, zmin=0, zmax=0, type=libMeshEnums::QUAD4,
gauss_lobatto_grid=false) at src/mesh/mesh_generation.C:1438
#13 0x00000001009e3219 in libMesh::MeshTools::Generation::build_square
(mesh=@0x7fff5fbfed10, nx=2, ny=2, xmin=0, xmax=1, ymin=0, ymax=1,
type=libMeshEnums::QUAD4, gauss_lobatto_grid=false) at
src/mesh/mesh_generation.C:1501
#14 0x0000000100002f12 in main (argc=2, argv=0x7fff5fbfedb0) at boyce_bug.cc:26


-- 
John

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