Very good, thanks. Where on your system is MPI actually installed? The issue is that the Parmetis makefile is not inheriting every -I…. that libMesh is using, which is actually the way I want it. In particular, it is not getting all of libmesh_optional_INCLUDES
But the only thing I suspect there is that your MPI lives in /usr/include, which should not *need* to be specified. Thanks, -Ben On Nov 19, 2012, at 9:14 AM, Robert <libm...@robertweidlich.de> wrote: > > > On Mon, Nov 19, 2012 at 08:43:52AM -0600, Kirk, Benjamin (JSC-EG311) wrote: >> >> On Nov 19, 2012, at 8:39 AM, Robert <libm...@robertweidlich.de> wrote: >> >>> My older installation of libmesh (r5498) works fine on the same computer >>> with MPI. Even with >>> "make V=0" I could not get more information about the compilerflags used, >>> so I cannot really >>> figure out, if it is a problem on my side or the build-system. >> >> >> Well the problem is that the MPI configuration is not being determined >> properly, but the question is why. Can you post the summary information >> from configure (where it prints all that) and also send me your config.log? >> >> configure should still be looking preferentially for the MPI compilers and >> then falling back to snooping the MPI configuration from PETSc, so this >> should be a straightforward fix. >> > > > The configure summary is pasted below and the config.log is attached > > ----------------------------------- SUMMARY > ----------------------------------- > > Package version.................... : libmesh-0.9.0 > > C++ compiler type.................. : gcc4.5 > C++ compiler....................... : g++ > C compiler......................... : gcc > Fortran compiler................... : gfortran > Build Method....................... : opt > CPPFLAGS........................... : -DNDEBUG > CXXFLAGS........................... : -O2 -felide-constructors -funroll-loops > -fstrict-aliasing -std=c++0x -Wdisabled-optimization -fopenmp > CFLAGS............................. : -O2 -funroll-loops -fstrict-aliasing > -fopenmp > Install dir........................ : /tmp/libmesh > Build user......................... : weidlich > Build host......................... : stokes > Configure date..................... : 2012-11-19 15:26 > Build architecture................. : x86_64-unknown-linux-gnu > SVN revision number................ : 6404 > > Library Features: > adaptive mesh refinement......... : yes > complex variables................ : no > ghosted vectors.................. : yes > high-order shape functions....... : yes > infinite elements................ : no > Dirichlet constraints............ : yes > node constraints................. : no > parallel mesh.................... : no > performance logging.............. : no > periodic boundary conditions..... : yes > reference counting............... : yes > shape function 2nd derivatives... : yes > stack trace files................ : no > subdomain id size................ : 2 bytes > variational smoother............. : yes > xdr binary I/O................... : yes > > Optional Packages: > boost............................ : yes > eigen............................ : no > exodus........................... : yes > fparser.......................... : yes > build from version............ : release > glpk............................. : no > gmv.............................. : yes > gzstream......................... : yes > laspack.......................... : yes > libhilbert....................... : yes > metis............................ : yes > mpi.............................. : yes > nemesis.......................... : yes > netcdf........................... : yes > openmp........................... : yes > parmetis......................... : yes > petsc............................ : yes > version....................... : 3.2.0 > sfcurves......................... : yes > slepc............................ : no > tbb.............................. : no > c++ threads...................... : no > tecio............................ : no > tecplot...(vendor binaries)...... : yes > tetgen........................... : yes > triangle......................... : yes > trilinos......................... : yes > AztecOO....................... : no > NOX........................... : no > ML............................ : no > vtk.............................. : yes > > libmesh_optional_INCLUDES........ : -I/home/xxxx/opt/include/vtk-5.6 > -I/home/xxxx/opt/build/petsc-3.2-p6/include > -I/home/xxxx/opt/build/petsc-3.2-p6/linux-gnu-opt/include -I/usr/include > > libmesh_optional_LIBS............ : -Wl,-rpath,/home/xxxx/opt/lib/vtk-5.6 > -L/home/xxxx/opt/lib/vtk-5.6 -lvtkIO -lvtkCommon -lvtkFiltering -lz > -L/home/xxxx/opt/build/petsc-3.2-p6/linux-gnu-opt/lib -lpetsc -lX11 > -Wl,-rpath,/home/xxxx/opt/build/petsc-3.2-p6/linux-gnu-opt/lib -lcmumps > -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis > -lsuperlu_4.2 -lscalapack -lblacs -lflapack -lfblas > -L/usr/lib64/gcc/x86_64-suse-linux/4.5 > -L/global/linux/64_bit/opt/intel/mkl/10.2.2.025/lib/em64t > -L/global/linux/64_bit/opt/intel/mkl/10.2.2.025/lib/32 > -L/global/linux/64_bit/opt/intel/mkl/10.2.2.025/lib/64 > -L/usr/x86_64-suse-linux/lib -lmpichf90 -lgfortran -lm -lmpich -lopa -lmpl > -lrt -lpthread -lgcc_s -ldl > > ------------------------------------------------------------------------------- > Configure complete, now type 'make' and then 'make install'. > > --------------------------------------------- > --------- Done Configuring libMesh ---------- > --------------------------------------------- > > <config.log> ------------------------------------------------------------------------------ Monitor your physical, virtual and cloud infrastructure from a single web console. 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