Hi Ben, I am using the mpi installation provided by PetSc with --download-mpich=1. So the mpi used should be the one in ~/opt/build/petsc-3.2-p6/linux-gnu-opt/include
Robert On Mon, Nov 19, 2012 at 09:28:22AM -0600, Kirk, Benjamin (JSC-EG311) wrote: > Very good, thanks. Where on your system is MPI actually installed? > > The issue is that the Parmetis makefile is not inheriting every -I…. that > libMesh is using, which is actually the way I want it. In particular, it is > not getting all of libmesh_optional_INCLUDES > > But the only thing I suspect there is that your MPI lives in /usr/include, > which should not *need* to be specified. > > Thanks, > > -Ben > > > > On Nov 19, 2012, at 9:14 AM, Robert <libm...@robertweidlich.de> wrote: > > > > > > > On Mon, Nov 19, 2012 at 08:43:52AM -0600, Kirk, Benjamin (JSC-EG311) wrote: > >> > >> On Nov 19, 2012, at 8:39 AM, Robert <libm...@robertweidlich.de> wrote: > >> > >>> My older installation of libmesh (r5498) works fine on the same computer > >>> with MPI. Even with > >>> "make V=0" I could not get more information about the compilerflags used, > >>> so I cannot really > >>> figure out, if it is a problem on my side or the build-system. > >> > >> > >> Well the problem is that the MPI configuration is not being determined > >> properly, but the question is why. Can you post the summary information > >> from configure (where it prints all that) and also send me your config.log? > >> > >> configure should still be looking preferentially for the MPI compilers and > >> then falling back to snooping the MPI configuration from PETSc, so this > >> should be a straightforward fix. > >> > > > > > > The configure summary is pasted below and the config.log is attached > > > > ----------------------------------- SUMMARY > > ----------------------------------- > > > > Package version.................... : libmesh-0.9.0 > > > > C++ compiler type.................. : gcc4.5 > > C++ compiler....................... : g++ > > C compiler......................... : gcc > > Fortran compiler................... : gfortran > > Build Method....................... : opt > > CPPFLAGS........................... : -DNDEBUG > > CXXFLAGS........................... : -O2 -felide-constructors > > -funroll-loops -fstrict-aliasing -std=c++0x -Wdisabled-optimization -fopenmp > > CFLAGS............................. : -O2 -funroll-loops -fstrict-aliasing > > -fopenmp > > Install dir........................ : /tmp/libmesh > > Build user......................... : xxxx > > Build host......................... : stokes > > Configure date..................... : 2012-11-19 15:26 > > Build architecture................. : x86_64-unknown-linux-gnu > > SVN revision number................ : 6404 > > > > Library Features: > > adaptive mesh refinement......... : yes > > complex variables................ : no > > ghosted vectors.................. : yes > > high-order shape functions....... : yes > > infinite elements................ : no > > Dirichlet constraints............ : yes > > node constraints................. : no > > parallel mesh.................... : no > > performance logging.............. : no > > periodic boundary conditions..... : yes > > reference counting............... : yes > > shape function 2nd derivatives... : yes > > stack trace files................ : no > > subdomain id size................ : 2 bytes > > variational smoother............. : yes > > xdr binary I/O................... : yes > > > > Optional Packages: > > boost............................ : yes > > eigen............................ : no > > exodus........................... : yes > > fparser.......................... : yes > > build from version............ : release > > glpk............................. : no > > gmv.............................. : yes > > gzstream......................... : yes > > laspack.......................... : yes > > libhilbert....................... : yes > > metis............................ : yes > > mpi.............................. : yes > > nemesis.......................... : yes > > netcdf........................... : yes > > openmp........................... : yes > > parmetis......................... : yes > > petsc............................ : yes > > version....................... : 3.2.0 > > sfcurves......................... : yes > > slepc............................ : no > > tbb.............................. : no > > c++ threads...................... : no > > tecio............................ : no > > tecplot...(vendor binaries)...... : yes > > tetgen........................... : yes > > triangle......................... : yes > > trilinos......................... : yes > > AztecOO....................... : no > > NOX........................... : no > > ML............................ : no > > vtk.............................. : yes > > > > libmesh_optional_INCLUDES........ : -I/home/xxxx/opt/include/vtk-5.6 > > -I/home/xxxx/opt/build/petsc-3.2-p6/include > > -I/home/xxxx/opt/build/petsc-3.2-p6/linux-gnu-opt/include -I/usr/include > > > > libmesh_optional_LIBS............ : -Wl,-rpath,/home/xxxx/opt/lib/vtk-5.6 > > -L/home/xxxx/opt/lib/vtk-5.6 -lvtkIO -lvtkCommon -lvtkFiltering -lz > > -L/home/xxxx/opt/build/petsc-3.2-p6/linux-gnu-opt/lib -lpetsc -lX11 > > -Wl,-rpath,/home/xxxx/opt/build/petsc-3.2-p6/linux-gnu-opt/lib -lcmumps > > -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis > > -lsuperlu_4.2 -lscalapack -lblacs -lflapack -lfblas > > -L/usr/lib64/gcc/x86_64-suse-linux/4.5 > > -L/global/linux/64_bit/opt/intel/mkl/10.2.2.025/lib/em64t > > -L/global/linux/64_bit/opt/intel/mkl/10.2.2.025/lib/32 > > -L/global/linux/64_bit/opt/intel/mkl/10.2.2.025/lib/64 > > -L/usr/x86_64-suse-linux/lib -lmpichf90 -lgfortran -lm -lmpich -lopa -lmpl > > -lrt -lpthread -lgcc_s -ldl > > > > ------------------------------------------------------------------------------- > > Configure complete, now type 'make' and then 'make install'. > > > > --------------------------------------------- > > --------- Done Configuring libMesh ---------- > > --------------------------------------------- > > > > <config.log> > ------------------------------------------------------------------------------ Monitor your physical, virtual and cloud infrastructure from a single web console. 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