It looks like mpicxx is not set up correctly?
I copied the main part of config.log below.
configure:2800: result: ---------------------------------------------
configure:2802: result: ----------- Configuring libMesh -------------
configure:2804: result: ---------------------------------------------
configure:2847: checking build system type
configure:2861: result: x86_64-unknown-linux-gnu
configure:2881: checking host system type
configure:2894: result: x86_64-unknown-linux-gnu
configure:2914: checking target system type
configure:2927: result: x86_64-unknown-linux-gnu
configure:3042: checking for mpicxx
configure:3058: found /share/apps/intel_11/mvapich/1.2/bin/mpicxx
configure:3069: result: mpicxx
configure:3096: checking for C++ compiler version
configure:3105: mpicxx --version >&5
icc (ICC) 11.1 20100806
Copyright (C) 1985-2010 Intel Corporation. All rights reserved.
configure:3116: $? = 0
configure:3105: mpicxx -v >&5
mpiCC for 1.2.7 (release) of : 2005/06/22 16:33:49
Version 11.1
ld /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/crt1.o
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/crti.o
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/crtbegin.o --eh-frame-hdr
-dynamic-linker /lib64/ld-linux-x86-64.so.2 -o a.out
-L/share/apps/intel_11/mvapich/1.2/lib -lmpich -L/usr/lib64
-rpath=/usr/lib64 -libverbs -libumad -lpthread
-L/share/apps/intel_11.1/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../.. -L/lib64 -L/lib
-L/usr/lib64 -L/usr/lib -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic
-lipgo -ldecimal -Bdynamic -lgcc_s -lgcc -Bstatic -lirc -Bdynamic -lc
-lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl -lc
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/crtend.o
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/crtn.o
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/crt1.o(.text+0x21):
In function `_start':
: undefined reference to `main'
rm /tmp/icc3GEi8Mlibgcc
rm /tmp/iccNAc2Rhgnudirs
rm /tmp/icczJ89lhgnudirs
configure:3116: $? = 1
configure:3105: mpicxx -V >&5
Intel(R) C Intel(R) 64 Compiler Professional for applications running on
Intel(R) 64, Version 11.1 Build 20100806 Package ID: l_cproc_p_11.1.073
Copyright (C) 1985-2010 Intel Corporation. All rights reserved.
configure:3116: $? = 0
configure:3105: mpicxx -qversion >&5
icc: command line warning #10006: ignoring unknown option '-qversion'
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64/crt1.o(.text+0x21):
In function `_start':
: undefined reference to `main'
configure:3116: $? = 1
configure:3136: checking whether the C++ compiler works
configure:3158: mpicxx conftest.cpp >&5
conftest.o(.eh_frame+0x12): undefined reference to `__gxx_personality_v0'
configure:3162: $? = 1
configure:3200: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define CONFIGURE_INFO "./configure run on Thu May 3 11:55:06 CDT 2012"
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:3205: error: in `/bevo2/ysakamoto/dev/libmesh-0.7.3.1/libmesh':
configure:3207: error: C++ compiler cannot create executables
See `config.log' for more details
On 05/03/2012 08:08 AM, John Peterson wrote:
> On Thu, May 3, 2012 at 12:03 AM, Yusuke Sakamoto
> <[email protected]> wrote:
>> Hello,
>>
>> I am trying to compile libmesh on bevo2 cluster.
>>
>> I first compiled petsc with this configuration:
>> ./configure --with-mpi-dir=/share/apps/intel_11/mvapich/1.2/
>>
>> I tested a couple of example petsc programs and they worked fine.
>>
>> Now, I am trying to compile libmesh with the same compilers. However,
>> when I tried to configure, C++ compiler seems not working.
>> Here is the output for ./configure
>>
>> ---------------------------------------------
>> ----------- Configuring libMesh -------------
>> ---------------------------------------------
>> checking build system type... x86_64-unknown-linux-gnu
>> checking host system type... x86_64-unknown-linux-gnu
>> checking target system type... x86_64-unknown-linux-gnu
>> checking for mpicxx... mpicxx
>> checking whether the C++ compiler works... no
>> configure: error: in `/bevo2/ysakamoto/src_3/libmesh-0.7.2/libmesh':
>> configure: error: C++ compiler cannot create executables
>> See `config.log' for more details
>>
>> I am not sure why this is failing. Can you help me with this issue?
> Probably a bad mpicxx is in your PATH.
>
> Try configuring again with the command (I'm guessing here)
>
> CXX=/share/apps/intel_11/mvapich/1.2/bin/mpicxx \
> CC=/share/apps/intel_11/mvapich/1.2/bin/mpicc \
> ./configure
>
> and see if you can get any further...
>
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