Hi!
When I try to solve a problem with subdomains I receive the following error:
*** Solving time step 2, time = 200 ***
Mesh Information:
mesh_dimension()=3
spatial_dimension()=3
n_nodes()=1331
n_local_nodes()=1331
n_elem()=1000
n_local_elem()=1000
n_active_elem()=1000
n_subdomains()=2
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
*** Beginning solving Navier-Stokes problem
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 10 BUS: Bus Error, possibly illegal memory
access
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find
memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR: INSTEAD the line number of the start of the function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 6, Wed Jan 11 09:28:45 CST
2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: run-dbg on a linux-gnu named MacBook-Pro-de-Daniel.local by
root Fri Nov 23 01:33:51 2012
[0]PETSC ERROR: Libraries linked from /Users/daniel/Dev/petsc-3.2-p6/lib
[0]PETSC ERROR: Configure run at Tue Feb 28 22:00:36 2012
[0]PETSC ERROR: Configure options --prefix=/Users/daniel/Dev/petsc-3.2-p6
--with-cxx=mpicxx --with-cc=mpicc --with-fc=mpif90 --download-f-blas-lapack=1
--download-hypre=1 --with-shared-libraries=0
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
file
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI COMMUNICATOR 3 DUP FROM 0
with errorcode 59.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun has exited due to process rank 0 with PID 3799 on
node MacBook-Pro-de-Daniel.local exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
I have four equations at all and for each one I have a similar piece of code
when I solve it:
if(time > dt ){
std::set<subdomain_id_type> id_list;
id_list.insert(1);
SystemSubsetBySubdomain::SubdomainSelectionByList
selection(id_list);
SystemSubsetBySubdomain subset(navier_stokes_system,
selection);
navier_stokes_system.restrict_solve_to(&subset,
SUBSET_ZERO);
}
equation_systems.get_system("Navier-Stokes").solve();
I defined two subdomains.
Any idea of what is the cause of this error?
Best regards,
Daniel.
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