Hi, I still try to install Libmesh on my Mac (OS X 10.8) but I am not able to enable slepc and pets so that the make checks are working. I installed petsc and slepc via macports and my configure command is:
../configure --prefix=/Users/vera/Desktop/libmesh_root/installed --with-glpk-include=/macports/include --with-glpk-lib=/macports/lib --with-eigen-include=/macports/include/eigen3/Eigen --enable-petsc --enable-slepc Can you help me and say where's the problem? Thank you in advance. Best, Vera __________ Vera Loeser Mathematisch technische Software Entwicklerin i.A. CATS - Chair for Computational Analysis of Technical Systems RWTH Aachen Schinkelstraße 2, Raum 123 D-52062 Aachen Tel. +49 241 80 99936 ___________________________________________________________________________________________________________ My config.log is: --------------------------------------------- ----------- Configuring libMesh ------------- --------------------------------------------- checking build system type... x86_64-apple-darwin12.5.0 checking host system type... x86_64-apple-darwin12.5.0 checking target system type... x86_64-apple-darwin12.5.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ../build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for src/base/libmesh.C... no <<< Configuring build directory for VPATH build >>> checking for style of include used by make... GNU checking for mpicxx... no checking for mpiCC... no checking for mpicc... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 <<< C++ compiler is gcc-4.8 >>> checking for mpicc... no checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for mpif90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for mpif77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes << Disabling GLIBCXX debugging on Darwin >>> No build methods specified, defaulting to "dbg devel opt" <<< Configuring libMesh with methods "dbg devel opt" >>> checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /macports/bin/ld checking if the linker (/macports/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /macports/bin/nm checking the name lister (/macports/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.5.0 file names to x86_64-apple-darwin12.5.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.5.0 file names to toolchain format... func_convert_file_noop checking for /macports/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /macports/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/macports/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /macports/bin/ld checking if the linker (/macports/bin/ld) is GNU ld... no checking whether the g++ linker (/macports/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fno-common -DPIC checking if g++ PIC flag -fno-common -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/macports/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/macports/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fno-common checking if gfortran PIC flag -fno-common works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/macports/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking Major version... 0 checking Minor version... 9 checking Point version... 3 checking whether ln -s works... yes checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for perl... /macports/bin/perl checking for pkg-config... no checking whether the compiler implements namespaces... yes --------------------------------------------- ------- Configuring compiler features ------- --------------------------------------------- <<< Default floating point is double precision (double) >>> checking for C/C++ restrict keyword... __restrict <<< Configuring library with getpwuid >>> <<< Configuring library with exception throwing support >>> checking size of short int... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long int... 8 checking size of float... 4 checking size of double... 8 checking size of void *... 8 checking size of function_pointer... 8 checking whether the compiler supports Run-Time Type Identification... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking csignal usability... yes checking csignal presence... yes checking for csignal... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking whether the compiler has locale... yes checking whether the compiler has stringstream... yes checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking xmmintrin.h usability... yes checking xmmintrin.h presence... yes checking for xmmintrin.h... yes checking whether the compiler supports std::unordered_multimap... no checking whether the compiler supports std::tr1::unordered_multimap... yes checking whether the compiler supports std::unordered_map... no checking whether the compiler supports std::tr1::unordered_map... yes checking whether the compiler supports std::unordered_set... no checking whether the compiler supports std::tr1::unordered_set... yes checking for dlfcn.h... (cached) yes checking whether the compiler supports GCC C++ ABI name demangling... yes checking whether the c++ compiler supports glibc backtrace... yes checking for OpenMP flag of C++ compiler... -fopenmp <<< Configuring library with OpenMP support >>> --------------------------------------------- ----- Done configuring compiler features ---- --------------------------------------------- --------------------------------------------- ----- Configuring core library features ----- --------------------------------------------- WARNING: using a legacy option <<< Configuring library to enable a default libMesh::CommWorld <<< <<< Configuring library to require ``include "libmesh/etc.h"'' style >>> <<< Configuring library to keep names in libMesh namespace >>> configuring size of boundary_id... 2 configuring size of dof_id... 4 configuring size of processor_id... 2 configuring size of subdomain_id... 2 <<< Configuring library with AMR support >>> <<< Configuring library with variational smoother support >>> <<< Configuring library with periodic BC support >>> <<< Configuring library with Dirichlet constraint support >>> <<< Configuring library to use ghosted local vectors >>> <<< Configuring library with higher order p-FEM shapes >>> <<< Configuring library with second derivatives >>> checking rpc/rpc.h usability... yes checking rpc/rpc.h presence... yes checking for rpc/rpc.h... yes checking for xdrstdio_create... yes <<< Configuring library with XDR support >>> <<< Configuring library with real number support >>> <<< Configuring library with reference counting support >>> <<< Configuring library example suite support >>> --------------------------------------------- -- Done configuring core library features --- --------------------------------------------- --------------------------------------------- ----- Configuring for optional packages ----- --------------------------------------------- checking for boostlib >= 1.20.0... configure: We could not detect the boost libraries (version 1.20 or higher). If you have a staged boost library (still not installed) please specify $BOOST_ROOT in your environment and do not give a PATH to --with-boost option. If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation. <<< External boost installation *not* found... will try to configure for libmesh's internal boost >>> checking for boostlib >= 1.20.0... yes <<< Using libmesh-provided boost in ./contrib >>> checking for petscarch... no checking /include/petscversion.h usability... no checking /include/petscversion.h presence... no checking for /include/petscversion.h... no <<< PETSc disabled. Will try configuring MPI now... >>> note: MPI library path not given... trying prefix=/usr g++ Compiler Does NOT Support MPI... <<< SLEPc disabled. Please set your "$SLEPC_DIR" environment variable correctly to enable SLEPc. >>> checking /usr/include/tbb/task_scheduler_init.h usability... no checking /usr/include/tbb/task_scheduler_init.h presence... no checking for /usr/include/tbb/task_scheduler_init.h... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... -D_THREAD_SAFE checking for PTHREAD_PRIO_INHERIT... yes <<< Configuring library with pthread support >>> checking whether the compiler supports std::thread... no checking whether TBB supports tbb::tbb_thread... no <<< Configuring library with Laspack support >>> <<< Configuring library with SFC support >>> checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for gzopen in -lz... yes <<< Configuring library with gzstreams support >>> checking for bzip2... bzip2 checking for bunzip2... bunzip2 <<< Using bzip2/bunzip2 for writing/reading compressed .bz2 files >>> checking for xz... xz <<< Using xz for writing/reading compressed .xz files >>> checking X11/Intrinsic.h usability... no checking X11/Intrinsic.h presence... no checking for X11/Intrinsic.h... no <<< Configuring library with Metis support >>> checking for thread local storage (TLS) class... __thread checking for doxygen... no <<< Configuring library with Tetgen support >>> <<< Configuring library with Triangle support >>> <<< Configuring library with GMV support >>> checking /vtkConfigure.h usability... no checking /vtkConfigure.h presence... no checking for /vtkConfigure.h... no VTK header files not found! checking /macports/include/eigen3/Eigen//Eigen/Eigen usability... no checking /macports/include/eigen3/Eigen//Eigen/Eigen presence... no checking for /macports/include/eigen3/Eigen//Eigen/Eigen... no <<< external Eigen header files not found, using Eigen from ./contrib >>> checking Eigen/Dense usability... yes checking Eigen/Dense presence... yes checking for Eigen/Dense... yes checking Eigen/Sparse usability... yes checking Eigen/Sparse presence... yes checking for Eigen/Sparse... yes checking for eigen - version >= 3.1.2... yes <<< Configuring library with Eigen support >>> checking /macports/include//glpk.h usability... yes checking /macports/include//glpk.h presence... yes checking for /macports/include//glpk.h... yes <<< Configuring library with GLPK version 4.48 support >>> checking for main in -lglpk... yes <<< Configuring library with GLPK support >>> checking hdf5.h usability... no checking hdf5.h presence... no checking for hdf5.h... no checking for hdf5 - version >= 1.8.0... configure: optional HDF5 library not found, or does not meet version requirements <<< Configuring library with NetCDF version 4 support >>> defining -DNOT_NETCDF4 for our Exodus build <<< Configuring library with Exodus version v5.22 support >>> <<< Configuring library with Exodus Fortran API >>> <<< Configuring library with libHilbert support >>> Disabling fparser optimization on darwin12.5.0 <<< checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for bison... bison -y <<< Configuring library with fparser support (release version) >>> checking for cppunit-config... no checking for Cppunit - version >= 1.10.0... no <<< Configuring library with nanoflann KDtree support >>> ---------------------------------------------- --- Done configuring for optional packages --- ---------------------------------------------- removing duplicate include paths... removing duplicate libraries... checking for git... /usr/bin/git checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating include/libmesh/Makefile config.status: creating contrib/Makefile config.status: creating contrib/utils/Makefile config.status: creating contrib/utils/Make.common config.status: creating tests/Makefile config.status: creating doc/Doxyfile config.status: creating contrib/utils/libmesh.pc config.status: creating contrib/utils/libmesh-opt.pc config.status: creating contrib/utils/libmesh-dbg.pc config.status: creating contrib/utils/libmesh-devel.pc config.status: creating contrib/utils/libmesh-prof.pc config.status: creating contrib/utils/libmesh-oprof.pc config.status: creating contrib/bin/libmesh-config config.status: creating contrib/bin/xda2mgf config.status: creating contrib/bin/create_libmesh_release config.status: creating doc/dot config.status: creating contrib/boost/include/Makefile config.status: creating contrib/laspack/Makefile config.status: creating contrib/sfcurves/Makefile config.status: creating contrib/gzstream/Makefile config.status: creating contrib/tecplot/tecio/Makefile config.status: creating contrib/tecplot/binary/Makefile config.status: creating contrib/metis/Makefile config.status: creating contrib/parmetis/Makefile config.status: creating contrib/tetgen/Makefile config.status: creating contrib/triangle/Makefile config.status: creating contrib/gmv/Makefile config.status: creating contrib/eigen/eigen/Makefile config.status: creating contrib/netcdf/v3/Makefile config.status: creating contrib/exodusii/v5.09/Makefile config.status: creating contrib/exodusii/v5.22/exodus/Makefile config.status: creating contrib/nemesis/v3.09/Makefile config.status: creating contrib/nemesis/v5.22/nemesis/Makefile config.status: creating contrib/libHilbert/Makefile config.status: creating contrib/fparser/Makefile config.status: creating contrib/fparser/extrasrc/Makefile config.status: creating contrib/nanoflann/Makefile config.status: creating examples/introduction/introduction_ex1/Makefile config.status: creating examples/introduction/introduction_ex2/Makefile config.status: creating examples/introduction/introduction_ex3/Makefile config.status: creating examples/introduction/introduction_ex4/Makefile config.status: creating examples/introduction/introduction_ex5/Makefile config.status: creating examples/adaptivity/adaptivity_ex1/Makefile config.status: creating examples/adaptivity/adaptivity_ex2/Makefile config.status: creating examples/adaptivity/adaptivity_ex3/Makefile config.status: creating examples/adaptivity/adaptivity_ex4/Makefile config.status: creating examples/adaptivity/adaptivity_ex5/Makefile config.status: creating examples/adjoints/adjoints_ex1/Makefile config.status: creating examples/adjoints/adjoints_ex2/Makefile config.status: creating examples/adjoints/adjoints_ex3/Makefile config.status: creating examples/adjoints/adjoints_ex4/Makefile config.status: creating examples/adjoints/adjoints_ex5/Makefile config.status: creating examples/eigenproblems/eigenproblems_ex1/Makefile config.status: creating examples/eigenproblems/eigenproblems_ex2/Makefile config.status: creating examples/eigenproblems/eigenproblems_ex3/Makefile config.status: creating examples/fem_system/fem_system_ex1/Makefile config.status: creating examples/fem_system/fem_system_ex2/Makefile config.status: creating examples/solution_transfer/solution_transfer_ex1/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex1/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex2/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex3/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex4/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex5/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex6/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex7/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex8/Makefile config.status: creating examples/miscellaneous/miscellaneous_ex9/Makefile config.status: creating examples/subdomains/subdomains_ex1/Makefile config.status: creating examples/subdomains/subdomains_ex2/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex1/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex2/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex3/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex4/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex5/Makefile config.status: creating examples/systems_of_equations/systems_of_equations_ex6/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex1/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex2/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex3/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex4/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex5/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex6/Makefile config.status: creating examples/reduced_basis/reduced_basis_ex7/Makefile config.status: creating examples/transient/transient_ex1/Makefile config.status: creating examples/transient/transient_ex2/Makefile config.status: creating examples/vector_fe/vector_fe_ex1/Makefile config.status: creating examples/vector_fe/vector_fe_ex2/Makefile config.status: creating examples/vector_fe/vector_fe_ex3/Makefile config.status: creating examples/vector_fe/vector_fe_ex4/Makefile config.status: creating examples/Makefile config.status: creating include/libmesh_config.h.tmp config.status: include/libmesh_config.h.tmp is unchanged config.status: executing include/libmesh_config.h commands config.status: creating include/libmesh_config.h - prefix LIBMESH for include/libmesh_config.h.tmp defines config.status: include/libmesh_config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands === configuring in contrib/netcdf/v4 (/Users/vera/Desktop/libmesh_root/build/contrib/netcdf/v4) configure: running /bin/sh ../../../../contrib/netcdf/v4/configure --disable-option-checking '--prefix=/Users/vera/Desktop/libmesh_root/installed' '--with-glpk-include=/macports/include/' '--with-glpk-lib=/macports/lib' '--with-eigen-include=/macports/include/eigen3/Eigen/' '--enable-petsc' '--enable-slepc' '--disable-netcdf-4' '--disable-testsets' 'CXX=g++' 'CC=gcc' 'F77=gfortran' 'FC=gfortran' 'CPPFLAGS= ' 'LIBS= ' --cache-file=/dev/null --srcdir=../../../../contrib/netcdf/v4 configure: netCDF 4.2.1.1 checking build system type... x86_64-apple-darwin12.5.0 checking host system type... x86_64-apple-darwin12.5.0 checking target system type... x86_64-apple-darwin12.5.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ../../../../contrib/netcdf/v4/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes configure: checking user options checking whether a win32 DLL is desired... no checking whether a NCIO_MINBLOCKSIZE was specified... 256 checking if fsync support is enabled... yes checking whether extra valgrind tests should be run... no checking whether we should try to build netCDF-4... no checking whether reading of HDF4 SD files is to be enabled... no checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a default chunk size in bytes was specified... 4194304 checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 checking whether a number of chunks for the default per-variable cache was specified... 10 checking whether a default file cache size for HDF5 was specified... 4194304 checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 checking whether a default cache preemption for HDF5 was specified... 0.75 checking whether netCDF-4 logging is enabled... no checking whether cdmremote client is to be built... no checking whether DAP client is to be built... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for curl_easy_setopt in -lcurl... yes checking for library containing curl_easy_setopt... -lcurl checking whether dap remote testing should be enabled (default off)... no checking whether netcdf4 group names should be enabled (default on)... yes checking whether the time-consuming dap tests should be enabled (default off)... no checking whether netCDF extra tests should be run (developers only)... no checking whether FFIO will be used... no checking whether examples should be built... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump/nccopy should be built... yes checking whether test should be built and run... no checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . configure: finding C compiler checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking whether gcc and cc understand -c and -o together... yes checking for an ANSI C-conforming const... yes checking whether a CURLOPT_KEYPASSWD is defined... yes configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /macports/bin/ld checking if the linker (/macports/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /macports/bin/nm checking the name lister (/macports/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin12.5.0 file names to x86_64-apple-darwin12.5.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin12.5.0 file names to toolchain format... func_convert_file_noop checking for /macports/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /macports/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/macports/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin12.5.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: finding other utilities checking for doxygen... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... checking CC CFLAGS... gcc -g -O2 checking type gcc... gcc is hashed (/macports/bin/gcc) checking CXX... g++ checking CXXFLAGS... checking type g++... g++ is /macports/bin/g++ checking FC... gfortran checking FFLAGS... checking type gfortran... gfortran is /macports/bin/gfortran checking F90... unset checking AR... ar checking AR_FLAGS... cru checking type ar... ar is hashed (/macports/bin/ar) checking NM... /macports/bin/nm checking NMFLAGS... configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking whether time.h and sys/time.h may both be included... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for vprintf... yes checking for _doprnt... no checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for strlcat... yes checking for strerror... yes checking for snprintf... yes checking for strchr... yes checking for strrchr... yes checking for strcat... yes checking for strcpy... yes checking for strdup... yes checking for strcasecmp... yes checking for strtod... yes checking for strtoll... yes checking for strtoull... yes checking for strstr... yes checking for mkstemp... yes checking for rand... yes checking for getrlimit... yes checking for gettimeofday... yes checking for fsync... yes checking for MPI_Comm_f2c... no checking whether in-memory files are enabled... yes checking for memmove... yes checking for getpagesize... yes checking for sysconf... yes checking whether mmap is enabled for in-memory files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getpagesize... (cached) yes checking for working mmap... yes checking for mremap... no mmap function or mremap function is not available: disabling mmap checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether signbit is declared... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... (cached) yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking for longlong... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking for library containing deflate... -lz checking for floor in -lm... yes checking what to call the output of the ftpbin target... binary-netcdf-4.2.1.1_nc3.tar gfortran g++ checking binary distribution directory... /home/ftp/pub/binary/dummy_system checking value of LIBS... -lm -lz -lcurl configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating nc-config config.status: creating netcdf.pc config.status: creating include/Makefile config.status: creating h5_test/Makefile config.status: creating man4/Makefile config.status: creating man4/images/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen3/Makefile config.status: creating ncgen/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating oc/Makefile config.status: creating libdap2/Makefile config.status: creating libcdmr/Makefile config.status: creating librpc/Makefile config.status: creating libdispatch/Makefile config.status: creating liblib/Makefile config.status: creating ncdump/cdl4/Makefile config.status: creating ncdump/expected4/Makefile config.status: creating ncdap_test/Makefile config.status: creating ncdap_test/testdata3/Makefile config.status: creating ncdap_test/expected3/Makefile config.status: creating ncdap_test/expected4/Makefile config.status: creating ncdap_test/expectremote3/Makefile config.status: creating ncdap_test/expectremote4/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------- SUMMARY ----------------------------------- Package version.................... : libmesh-0.9.3-pre C++ compiler type.................. : gcc4.8 C++ compiler....................... : g++ C compiler......................... : gcc Fortran compiler................... : gfortran Build Methods...................... : dbg devel opt CPPFLAGS...(dbg)................... : -DDEBUG CXXFLAGS...(dbg)................... : -O0 -felide-constructors -g -ansi -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual -fopenmp CFLAGS.....(dbg)................... : -g -Wimplicit -fopenmp CPPFLAGS...(devel)................. : CXXFLAGS...(devel)................. : -O2 -felide-constructors -g -ansi -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization -fopenmp CFLAGS.....(devel)................. : -O2 -g -Wimplicit -funroll-loops -fstrict-aliasing -fopenmp CPPFLAGS...(opt)................... : -DNDEBUG CXXFLAGS...(opt)................... : -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization -fopenmp CFLAGS.....(opt)................... : -O2 -funroll-loops -fstrict-aliasing -fopenmp Install dir........................ : /Users/vera/Desktop/libmesh_root/installed Build user......................... : vera Build host......................... : 158-162.eduroam.rwth-aachen.de Build architecture................. : x86_64-apple-darwin12.5.0 Git revision....................... : 1b400061e232bf80c88a2a6fdc2a784f2248dbad Library Features: adaptive mesh refinement......... : yes blocked matrix/vector storage.... : no complex variables................ : no example suite.................... : yes ghosted vectors.................. : yes high-order shape functions....... : yes id size (boundaries)............. : 2 bytes id size (dofs)................... : 4 bytes id size (processors)............. : 2 bytes id size (subdomains)............. : 2 bytes infinite elements................ : no Dirichlet constraints............ : yes node constraints................. : no parallel mesh.................... : no performance logging.............. : no periodic boundary conditions..... : yes reference counting............... : yes shape function 2nd derivatives... : yes stack trace files................ : no variational smoother............. : yes xdr binary I/O................... : yes providing libMesh::CommWorld..... : yes ***LEGACY FEATURE*** Optional Packages: boost............................ : yes cppunit.......................... : no eigen............................ : yes exodus........................... : yes version....................... : v5.22 fparser.......................... : yes build from version............ : release glpk............................. : yes gmv.............................. : yes gzstream......................... : yes hdf5............................. : no laspack.......................... : yes libhilbert....................... : yes metis............................ : yes mpi.............................. : no nanoflann........................ : yes nemesis.......................... : no netcdf........................... : yes version....................... : 4 openmp........................... : yes parmetis......................... : no petsc............................ : no pthreads......................... : yes sfcurves......................... : yes slepc............................ : no tbb.............................. : no c++ threads...................... : no c++ rtti ........................ : yes tecio............................ : no tecplot...(vendor binaries)...... : no tetgen........................... : yes triangle......................... : yes trilinos......................... : no vtk.............................. : no libmesh_optional_INCLUDES........ : -I/macports/include -D_THREAD_SAFE -pthread -I../contrib/boost/include libmesh_optional_LIBS............ : -Wl,-rpath,/macports/lib -L/macports/lib -lglpk -lz ------------------------------------------------------------------------------- Configure complete, now type 'make' and then 'make install'. --------------------------------------------- --------- Done Configuring libMesh ---------- --------------------------------------------- ------------------------------------------------------------------------------ LIMITED TIME 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BEST VALUE: New Multi-Library Power Pack includes Mobile, Cloud, Java, and UX Design. Lowest price ever! Ends 9/20/13. http://pubads.g.doubleclick.net/gampad/clk?id=58041151&iu=/4140/ostg.clktrk _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
