Hi,

I recompiled libmesh in new "build" and "installed" directories but I'm 
still getting the same error if writing the Exodus file...

In case there might be a conection, at the end of "make check" there are 
two failed tests:

    Making check in libdispatch
    make[3]: Nothing to be done for `check'.
    Making check in libsrc
    make[3]: Nothing to be done for `check'.
    Making check in libsrc4
    make[3]: Nothing to be done for `check'.
    Making check in libdap2
    make[3]: Nothing to be done for `check'.
    Making check in liblib
    make[3]: Nothing to be done for `check'.
    Making check in ncgen3
    make  check-TESTS
    *** Testing ncgen3.
    *** creating classic file c0.nc from c0.cdl...
    ../../../../../contrib/netcdf/v4/ncgen3/run_tests.sh: line 8: 37560
    Segmentation fault: 11  ./ncgen3 -b -o c0.nc $srcdir/c0.cdl
    FAIL: run_tests.sh
    *** Testing ncgen3 for netCDF-4.
    *** creating netCDF-4 file c0_4.nc from c0.cdl...
    ../../../../../contrib/netcdf/v4/ncgen3/run_nc4_tests.sh: line 8:
    37581 Segmentation fault: 11  ./ncgen3 -k3 -b -o c0_4.nc $srcdir/c0.cdl
    FAIL: run_nc4_tests.sh
    ================================================
    2 of 2 tests failed
    Please report to [email protected]
    ================================================


Thanks!
Lorenzo

On 5/13/14 6:28 PM, John Peterson wrote:
> On Tue, May 13, 2014 at 9:40 AM, Lorenzo Zanon 
> <[email protected] <mailto:[email protected]>> wrote:
>
>     I'm not completely sure this is the information you are asking
>     for, but the OSX is 10.8.5, and we are using macports. The
>     configuration line we are currently using is:
>
>     ../configure \
>     --prefix=/home/zanon/Desktop/libmesh_root/installed \
>     --with-glpk-include=/usr/local/macports108/include \
>     --with-glpk-lib=/usr/local/macports108/lib \
>     --with-eigen-include=/usr/local/macports108/include/eigen3 \
>     --with-hdf5=/usr/local/macports108 \
>     --with-mpi-dir=/usr/local/macports108/lib/openmpi-gcc48/openmpi \
>     --enable-petsc \
>     --enable-slepc \
>     --enable-mpi \
>     --enable-examples \
>     CXX=mpicxx-openmpi-gcc48 CC=mpicc-openmpi-gcc48
>     FC=mpif90-openmpi-gcc48 F77=mpif90-openmpi-gcc48 \
>     CXXFLAGS=-I/usr/X11/include LDFLAGS=-L/usr/X11/lib \
>
>
>
> I don't use macports but this setup looks like it should be fine to me...
>
> I still suspect an invalid build, so I'd recommend starting with a 
> clean build directory unless you just did that recently.
>
> -- 
> John
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