Hi, I contacted the netCDF support. They basically couldn't tell me what exactly was going wrong, but at the end they said
> I'm going to recommend that you start over with the current > release of netCDF-C, version 4.3.2, and build and install that. Then > I recommend that you build and install netCDF-Fortran, version 4.2, by > following the instructions we supply here: > > http://www.unidata.ucar.edu/netcdf/docs/getting_and_building_netcdf.html > http://www.unidata.ucar.edu/netcdf/docs/building_netcdf_fortran.html > > The reason I'm recommending starting over is that it looks like you > are no longer having the problem you originally reported... What I tried now, is to brutally replace 4.3.1 with 4.3.2 in /libmesh_root/contrib/netcdf, and re-configure and make in new "build" and "installed" directories. It doesn't look like working though, since at the end of make check I still have the two failed tests: > Making check in ncgen3 make check-TESTS *** Testing ncgen3. *** > creating classic file c0.nc from c0.cdl... > ../../../../../contrib/netcdf/v4/ncgen3/run_tests.sh: line 8: 47202 > Segmentation fault: 11 ./ncgen3 -b -o c0.nc $srcdir/c0.cdl FAIL: > run_tests.sh *** Testing ncgen3 for netCDF-4. *** creating netCDF-4 > file c0_4.nc from c0.cdl... > ../../../../../contrib/netcdf/v4/ncgen3/run_nc4_tests.sh: line 8: > 47223 Segmentation fault: 11 ./ncgen3 -k3 -b -o c0_4.nc $srcdir/c0.cdl > FAIL: run_nc4_tests.sh > ================================================ 2 of 2 tests failed > Please report to [email protected] > ================================================ Do you have to change something in the repository so that it becomes compatible with netcdf-C 4.3.2? What about netCDF-Fortran? I don't have to install it myself for using libMesh, do I? Thanks! Lorenzo > > On Mon, May 19, 2014 at 5:35 AM, Lorenzo Zanon > <[email protected] <mailto:[email protected]>> wrote: > > Hi, > > I recompiled libmesh in new "build" and "installed" directories > but I'm still getting the same error if writing the Exodus file... > > In case there might be a conection, at the end of "make check" > there are two failed tests: > > Making check in libdispatch > make[3]: Nothing to be done for `check'. > Making check in libsrc > make[3]: Nothing to be done for `check'. > Making check in libsrc4 > make[3]: Nothing to be done for `check'. > Making check in libdap2 > make[3]: Nothing to be done for `check'. > Making check in liblib > make[3]: Nothing to be done for `check'. > Making check in ncgen3 > make check-TESTS > *** Testing ncgen3. > *** creating classic file c0.nc <http://c0.nc> from c0.cdl... > ../../../../../contrib/netcdf/v4/ncgen3/run_tests.sh: line 8: > 37560 Segmentation fault: 11 ./ncgen3 -b -o c0.nc > <http://c0.nc> $srcdir/c0.cdl > FAIL: run_tests.sh > *** Testing ncgen3 for netCDF-4. > *** creating netCDF-4 file c0_4.nc <http://c0_4.nc> from c0.cdl... > ../../../../../contrib/netcdf/v4/ncgen3/run_nc4_tests.sh: line > 8: 37581 Segmentation fault: 11 ./ncgen3 -k3 -b -o c0_4.nc > <http://c0_4.nc> $srcdir/c0.cdl > FAIL: run_nc4_tests.sh > ================================================ > 2 of 2 tests failed > Please report to [email protected] > <mailto:[email protected]> > ================================================ > > > This definitely looks like it's related to the problem, but > unfortunately I've never seen anything like this before. > > These are NetCDF's test programs, so I'm not really able to debug > them... you might try emailing them and/or checking their support > pages for related bug reports. > > -- > John ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. Written by three acclaimed leaders in the field, this first edition is now available. Download your free book today! http://p.sf.net/sfu/NeoTech _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
