I currently only have opt mode, the errors are as follows. It can pass those lines, but stopped and output error at equation_systems.init ();, which is the next line of the above codes. If I use serial mesh: SerialMesh mesh(init.comm()); Then there is no problem.
[0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.5.3, unknown [0]PETSC ERROR: ./example-opt on a arch-darwin-c-opt named mcswl094.mcs.anl.gov by xzhao Fri Feb 20 13:58:43 2015 [0]PETSC ERROR: Configure options --download-fblaslapack --download-mpich --download-mumps --download-scalapack --download-hypre -download-superlu_dist --download-parmetis --download-metis --download-triangle -download-chaco --download-ml --with-opencl=0 --with-debugging=0 [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [1]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: Signal received [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [1]PETSC ERROR: [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [2]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [2]PETSC ERROR: to get more information on the crash. [2]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [2]PETSC ERROR: Signal received [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [2]PETSC ERROR: Petsc Release Version 3.5.3, unknown [2]PETSC ERROR: ./example-opt on a arch-darwin-c-opt named mcswl094.mcs.anl.gov by xzhao Fri Feb 20 13:58:43 2015 [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [3]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [3]PETSC ERROR: to get more information on the crash. [3]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [3]PETSC ERROR: Signal received [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [3]PETSC ERROR: Petsc Release Version 3.5.3, unknown [3]PETSC ERROR: ./example-opt on a arch-darwin-c-opt named mcswl094.mcs.anl.gov by xzhao Fri Feb 20 13:58:43 2015 [3]PETSC ERROR: Configure options --download-fblaslapack --download-mpich --download-mumps --download-scalapack --download-hypre -download-superlu_dist --download-parmetis --download-metis --download-triangle -download-chaco --download-ml --with-opencl=0 --with-debugging=0 application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 Petsc Release Version 3.5.3, unknown [1]PETSC ERROR: ./example-opt on a arch-darwin-c-opt named mcswl094.mcs.anl.gov by xzhao Fri Feb 20 13:58:43 2015 [1]PETSC ERROR: Configure options --download-fblaslapack --download-mpich --download-mumps --download-scalapack --download-hypre -download-superlu_dist --download-parmetis --download-metis --download-triangle -download-chaco --download-ml --with-opencl=0 --with-debugging=0 [1]PETSC ERROR: #1 User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 [2]PETSC ERROR: Configure options --download-fblaslapack --download-mpich --download-mumps --download-scalapack --download-hypre -download-superlu_dist --download-parmetis --download-metis --download-triangle -download-chaco --download-ml --with-opencl=0 --with-debugging=0 [2]PETSC ERROR: #1 User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2 [3]PETSC ERROR: #1 User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3 [cli_1]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 [cli_2]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2 [cli_3]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3 ------------------------------------------------------------------------------------------------------------------- | Processor id: 0 | | Num Processors: 4 | | Time: Fri Feb 20 13:58:43 2015 | | OS: Darwin | | HostName: mcswl094.mcs.anl.gov | | OS Release: 14.1.0 | | OS Version: Darwin Kernel Version 14.1.0: Mon Dec 22 23:10:38 PST 2014; root:xnu-2782.10.72~2/RELEASE_X86_64 | | Machine: x86_64 | | Username: xzhao | | Configuration: ./configure '-prefix=/Users/xzhao/software/libmesh' | | '--enable-everything' | | '--disable-strict-lgpl' | | '--enable-parmesh' | | 'PETS =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 50290 RUNNING AT mcswl094.mcs.anl.gov = EXIT CODE: 59 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== On Fri, Feb 20, 2015 at 1:56 PM, Roy Stogner <[email protected]> wrote: > > On Fri, 20 Feb 2015, Xujun Zhao wrote: > > Sorry for the incomplete message. I am simulating a channel flow with >> periodic boundary conditions. See the codes below. It seems to work well >> for serial run, but fails for the mpirun. I am curious if the PBC is >> supported for the parallel implementation. >> > > It's definitely supported in parallel. > > What's the exact error? (in dbg mode, with stack trace, please) > --- > Roy > ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=190641631&iu=/4140/ostg.clktrk _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
