Thanks! This seems to do the trick, at least for the installation. The “make”
and “make install” steps work with no problems, but I’m getting an error during
the “make check” step. The failed test output is given below. Should I be
worried by it?
Thiago
***************************************************************
* Running Example miscellaneous_ex3:
* example-dbg -r 3 -o FIRST
***************************************************************
Running
/Users/breubreubreu/Execs/libmesh/examples/miscellaneous/miscellaneous_ex3/.libs/example-dbg
-r 3 -o FIRST
*** Warning, AutoPtr is deprecated and will be removed in a future library
version! ./include/libmesh/auto_ptr.h, line 270, compiled Jul 1 2015 at
09:57:09 ***
Mesh Information:
elem_dimensions()={2}
spatial_dimension()=3
n_nodes()=225
n_local_nodes()=225
n_elem()=255
n_local_elem()=255
n_active_elem()=192
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
EquationSystems
n_systems()=1
System #0, "Laplace-Young"
Type "NonlinearImplicit"
Variables="u"
Finite Element Types="LAGRANGE"
Approximation Orders="FIRST"
n_dofs()=225
n_local_dofs()=225
n_constrained_dofs()=0
n_local_constrained_dofs()=0
n_vectors()=1
n_matrices()=1
DofMap Sparsity
Average On-Processor Bandwidth <= 8.11111
Average Off-Processor Bandwidth <= 0
Maximum On-Processor Bandwidth <= 9
Maximum Off-Processor Bandwidth <= 0
DofMap Constraints
Number of DoF Constraints = 0
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Object is in wrong state
[0]PETSC ERROR: Vec is locked read only, argument # 1
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.6.0, Jun, 09, 2015
[0]PETSC ERROR:
/Users/breubreubreu/Execs/libmesh/examples/miscellaneous/miscellaneous_ex3/.libs/example-dbg
on a arch-darwin-c-debug named dhcp-103-99.wifi-auth.ecp.fr by breubreubreu
Wed Jul 1 11:27:41 2015
[0]PETSC ERROR: Configure options --with-cc=mpicc --with-cxx=mpicxx
--with-fc=mpif90
[0]PETSC ERROR: #1 VecGetArray() line 1646 in
/Users/breubreubreu/Execs/petsc-3.6.0/src/vec/vec/interface/rvector.c
[0]PETSC ERROR: #2 VecAssemblyEnd_MPI() line 1045 in
/Users/breubreubreu/Execs/petsc-3.6.0/src/vec/vec/impls/mpi/pdvec.c
[0]PETSC ERROR: #3 VecAssemblyEnd() line 188 in
/Users/breubreubreu/Execs/petsc-3.6.0/src/vec/vec/interface/vector.c
[0]PETSC ERROR: #4 close() line 952 in ./include/libmesh/petsc_vector.h
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 73.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
FAIL: run.sh
====================================================
1 of 1 test failed
Please report to [email protected]
====================================================
> On 30 Jun 2015, at 16:44, John Peterson <[email protected]> wrote:
>
>
>
> On Tue, Jun 30, 2015 at 8:12 AM, Thiago Milanetto Schlittler
> <[email protected]> wrote:
> I’m using OpenMPI 1.7.5 (installed through MacPorts) and PETSc / SLEPc 3.6.0
> (installed “by hand” with MPI compilers). The configure summary is given
> below.
>
>
> ----------------------------------- SUMMARY
> -----------------------------------
>
> Package version.................... : libmesh-0.9.4
>
> Ah, here's (at least part of) the problem: libmesh-0.9.4 does not support
> PETSc 3.6.0. If you want to use that version of PETSc (which I do recommend)
> you should use the master branch of libmesh. PETSc 3.6.0 and libmesh support
> for it was only added as of June 2015.
>
>
> John
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