On Wed, Jun 15, 2016 at 8:00 PM, Jayaraman, Vegnesh <vjayr...@illinois.edu> wrote:
> Hi > > I installed libmesh with the following configure options > ./configure --prefix=/nobackup/vjayara1/codes/dtkmesh --enable-tecplot > --enable-trilinos --enable-dtk > --with-trilinos=/nobackup/vjayara1/codes/trilinos_install > --with-dtk=/nobackup/vjayara1/codes/trilinos_install > --enable-default-comm-world --with-cxx=`which mpicxx` --with-cc=`which > mpicc` --with-fc=`which mpif90` > --with-tbb=/nasa/intel/Compiler/2015.0.090/composer_xe_2015.0.090/tbb > --with-tbb-lib=/nasa/intel/Compiler/2015.0.090/composer_xe_2015.0.090/tbb/lib/intel64/gcc4.4 > > > The installation proceeded without any error. > Is this *exactly* what you typed? The normal procedure is to build in a separate directory to avoid cluttering the source tree and prevent object files from different builds from getting mixed up together: mkdir build cd build ../configure --your-configure-options... See also the README.md file here: https://github.com/libMesh/libmesh > However, when I tried to run mesh_transfer example/simple_DTK example. I > am getting the message > Configuring libMesh with "--enable-trilinos" is required to run this > example. > > I have installed trilinos with DTK and when I configure libmesh, towards > the end, it does tell > > Trilinos ---- yes > DTK ------ yes > > I am not sure what is the issue preventing me from running this example. > It sounds like there is something wrong with your build, as there is an inconsistency between what you say configure reported and what ended up in the libmesh_config.h file. What is the output of grep TRILINOS build/include/libmesh_config.h > > In addition, when I run make check , I get the following error. > > Assembling the System [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, > probably memory access out of range > [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [0]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS > X to find memory corruption errors > [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and > run > [0]PETSC ERROR: to get more information on the crash. > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Signal received > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > for trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.7.2, unknown > [0]PETSC ERROR: > /nobackupp2/vjayara1/codes/libmesh/examples/fem_system/fem_system_ex1/.libs/example-opt > on a icc_2015.0.090openmp_1.6.5 named pfe22 by vjayara1 Wed Jun 15 18:35:52 > 2016 > [0]PETSC ERROR: Configure options > --with-cxx=/nasa/openmpi/1.6.5/intel/bin/mpicxx > --with-cc=/nasa/openmpi/1.6.5/intel/bin/mpicc > --with-fc=/nasa/openmpi/1.6.5/intel/bin/mpif90 --with-shared-libraries > --with-debugging=0 > --with-blas-lapack-lib="-L/nasa/intel/Compiler/2015.0.090/composer_xe_2015.0.090/mkl/lib/intel64 > -Wl,-rpath,/nasa/intel/Compiler/2015.0.090/composer_xe_2015.0.090/mkl/lib/intel64 > -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" --download-hypre=yes > --with-openmp=1 > [0]PETSC ERROR: #1 User provided function() line 0 in unknown file > -------------------------------------------------------------------------- > This error is from fem_system_ex1, but there's no way to know what caused it without a debug mode stack trace. It could also indicate more problems with the build. -- John ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports. http://pubads.g.doubleclick.net/gampad/clk?id=1444514421&iu=/41014381 _______________________________________________ Libmesh-users mailing list Libmesh-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/libmesh-users
