Paul, I fixed what I thought was causing a problem, but this didn't work. When I use ./configure --disable-metaphysicl --with-petsc --with-slepc libmesh becomes configured, but without petsc or slepc. I originally thought the problem was the .bashrc file, which defined the PATH for the petsc and slepc directories, but I fixed the bashrc file and this error still persists. A new config.log file is attached.
Harrison Pearce SDSU Undergraduate in Chemical Physics On Wed, Aug 1, 2018 at 3:28 PM, Harry Pearce <harroontheg...@gmail.com> wrote: > Paul, > Here it is! There is another problem but I think I know what's causing it > so I will ask if I can't figure it out. > > Thanks again, > Harrison Pearce > SDSU undergraduate in Chemical Physics > > On Wed, Aug 1, 2018 at 3:10 PM, Paul T. Bauman <ptbau...@gmail.com> wrote: > >> >> >> On Wed, Aug 1, 2018 at 5:50 PM Harry Pearce <harroontheg...@gmail.com> >> wrote: >> >>> Paul, >>> Thanks! Your recommendation worked! >>> >> >> Great, glad you got it working. Let us know if you run into other issues. >> >> >>> My config.log file is attached just in case you still want to see it. >>> >> >> Thanks, but this is the one for your successful build. If you're willing, >> could you please pass along the for failed configure (when you didn't have >> --disable-metaphysicl)? Thanks! >> >> >>> >>> Thankfully, >>> Harrison Rojak Pearce >>> SDSU Undergraduate in Chemical Physics >>> >>> On Wed, Aug 1, 2018 at 1:34 PM, Paul T. Bauman <ptbau...@gmail.com> >>> wrote: >>> >>>> Thanks for the report. >>>> >>>> If you don't need metaphysicl, probably the quickest thing you can do >>>> is pass `--disable-metaphysicl` >>>> to libmesh configure. >>>> >>>> What compiler are you using? I wonder if it's too old to build that >>>> boost module? >>>> Could you send along your config.log (can send to me directly, the >>>> mailing list will strip it). >>>> I'm curious to see what caused that failure. >>>> >>>> On Wed, Aug 1, 2018 at 4:17 PM Harry Pearce <harroontheg...@gmail.com> >>>> wrote: >>>> >>>>> Hello fellow libmesh users!, >>>>> >>>>> I am trying to configure libmesh 1.3.0. >>>>> When I run ./configure I get the error: >>>>> checking for Boost headers version >= 1.47.0... yes >>>>> checking for Boost's header version... 1_55 >>>>> checking for the toolset name used by Boost for mpicxx... configure: >>>>> WARNING: could not figure out which toolset name to use for mpicxx >>>>> >>>>> checking for the flags needed to use pthreads... conftest.cpp: In >>>>> function >>>>> 'int main()': >>>>> conftest.cpp:33:24: warning: null argument where non-null required >>>>> (argument 1) [-Wnonnull] >>>>> pthread_attr_init(0); pthread_cleanup_push(0, 0); >>>>> ^ >>>>> conftest.cpp:34:27: warning: null argument where non-null required >>>>> (argument 1) [-Wnonnull] >>>>> pthread_create(0,0,0,0); pthread_cleanup_pop(0); >>>>> ^ >>>>> conftest.cpp:34:27: warning: null argument where non-null required >>>>> (argument 3) [-Wnonnull] >>>>> conftest.cpp:32:34: warning: 'th' is used uninitialized in this >>>>> function >>>>> [-Wuninitialized] >>>>> pthread_t th; pthread_join(th, 0); >>>>> ^ >>>>> -pthread >>>>> configure: /vexcl/vexcl.hpp not found >>>>> configure: /include/vexcl/vexcl.hpp not found >>>>> checking whether we are using the Microsoft C++ compiler... no >>>>> checking CL/cl.h usability... no >>>>> checking CL/cl.h presence... no >>>>> checking for CL/cl.h... no >>>>> checking OpenCL/cl.h usability... no >>>>> checking OpenCL/cl.h presence... no >>>>> checking for OpenCL/cl.h... no >>>>> checking windows.h usability... no >>>>> checking windows.h presence... no >>>>> checking for windows.h... no >>>>> checking for OpenCL library... no >>>>> checking boost/system/error_code.hpp usability... yes >>>>> checking boost/system/error_code.hpp presence... yes >>>>> checking for boost/system/error_code.hpp... yes >>>>> checking for the Boost system library... yes >>>>> checking boost/chrono.hpp usability... yes >>>>> checking boost/chrono.hpp presence... yes >>>>> checking for boost/chrono.hpp... yes >>>>> checking for the Boost chrono library... (cached) yes >>>>> checking boost/date_time/posix_time/posix_time.hpp usability... no >>>>> checking boost/date_time/posix_time/posix_time.hpp presence... yes >>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>> present but >>>>> cannot be compiled >>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>> check >>>>> for missing prerequisite headers? >>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: see the >>>>> Autoconf documentation >>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>> section >>>>> "Present But Cannot Be Compiled" >>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>> proceeding >>>>> with the compiler's result >>>>> configure: WARNING: ## --------------------------------------- ## >>>>> configure: WARNING: ## Report this to royst...@ices.utexas.edu ## >>>>> configure: WARNING: ## --------------------------------------- ## >>>>> checking for boost/date_time/posix_time/posix_time.hpp... no >>>>> configure: error: cannot find boost/date_time/posix_time/pos >>>>> ix_time.hpp >>>>> configure: error: ./configure failed for contrib/metaphysicl/0.2.0 >>>>> >>>>> I thought the problem may have had to do with the installation of >>>>> mpich >>>>> but I reinstalled it and the problem persists. I am wondering if the >>>>> problem is with libmesh, boost, or something else. >>>>> >>>>> I have read over some of the entries relating to this problem, and >>>>> they did >>>>> not help, although there are alot of entries so if someone has already >>>>> solved this problem and you can point me in the direction of their >>>>> post, >>>>> that also works. >>>>> >>>>> Thanks, >>>>> Harrison Rojak Pearce >>>>> SDSU undergraduate in Chemical Physics >>>>> ------------------------------------------------------------ >>>>> ------------------ >>>>> Check out the vibrant tech community on one of the world's most >>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot >>>>> _______________________________________________ >>>>> Libmesh-users mailing list >>>>> Libmesh-users@lists.sourceforge.net >>>>> https://lists.sourceforge.net/lists/listinfo/libmesh-users >>>>> >>>> >>> > ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ Libmesh-users mailing list Libmesh-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/libmesh-users
