It looks like you haven't set PETSC_DIR and PETSC_ARCH. You need to set these variables in your environment - these are how libMesh detects your PETSc installation. Similarly for SLEPc (although I believe SLEPc is just bundled with recent versions of PETSc, but don't quote me.)
On Wed, Aug 1, 2018 at 7:11 PM Harry Pearce <[email protected]> wrote: > Paul, > I fixed what I thought was causing a problem, but this didn't work. When I > use ./configure --disable-metaphysicl --with-petsc --with-slepc libmesh > becomes configured, but without petsc or slepc. I originally thought the > problem was the .bashrc file, which defined the PATH for the petsc and > slepc directories, but I fixed the bashrc file and this error still > persists. A new config.log file is attached. > > Harrison Pearce > SDSU Undergraduate in Chemical Physics > > On Wed, Aug 1, 2018 at 3:28 PM, Harry Pearce <[email protected]> > wrote: > >> Paul, >> Here it is! There is another problem but I think I know what's causing it >> so I will ask if I can't figure it out. >> >> Thanks again, >> Harrison Pearce >> SDSU undergraduate in Chemical Physics >> >> On Wed, Aug 1, 2018 at 3:10 PM, Paul T. Bauman <[email protected]> >> wrote: >> >>> >>> >>> On Wed, Aug 1, 2018 at 5:50 PM Harry Pearce <[email protected]> >>> wrote: >>> >>>> Paul, >>>> Thanks! Your recommendation worked! >>>> >>> >>> Great, glad you got it working. Let us know if you run into other issues. >>> >>> >>>> My config.log file is attached just in case you still want to see it. >>>> >>> >>> Thanks, but this is the one for your successful build. If you're >>> willing, could you please pass along the for failed configure (when you >>> didn't have --disable-metaphysicl)? Thanks! >>> >>> >>>> >>>> Thankfully, >>>> Harrison Rojak Pearce >>>> SDSU Undergraduate in Chemical Physics >>>> >>>> On Wed, Aug 1, 2018 at 1:34 PM, Paul T. Bauman <[email protected]> >>>> wrote: >>>> >>>>> Thanks for the report. >>>>> >>>>> If you don't need metaphysicl, probably the quickest thing you can do >>>>> is pass `--disable-metaphysicl` >>>>> to libmesh configure. >>>>> >>>>> What compiler are you using? I wonder if it's too old to build that >>>>> boost module? >>>>> Could you send along your config.log (can send to me directly, the >>>>> mailing list will strip it). >>>>> I'm curious to see what caused that failure. >>>>> >>>>> On Wed, Aug 1, 2018 at 4:17 PM Harry Pearce <[email protected]> >>>>> wrote: >>>>> >>>>>> Hello fellow libmesh users!, >>>>>> >>>>>> I am trying to configure libmesh 1.3.0. >>>>>> When I run ./configure I get the error: >>>>>> checking for Boost headers version >= 1.47.0... yes >>>>>> checking for Boost's header version... 1_55 >>>>>> checking for the toolset name used by Boost for mpicxx... configure: >>>>>> WARNING: could not figure out which toolset name to use for mpicxx >>>>>> >>>>>> checking for the flags needed to use pthreads... conftest.cpp: In >>>>>> function >>>>>> 'int main()': >>>>>> conftest.cpp:33:24: warning: null argument where non-null required >>>>>> (argument 1) [-Wnonnull] >>>>>> pthread_attr_init(0); pthread_cleanup_push(0, 0); >>>>>> ^ >>>>>> conftest.cpp:34:27: warning: null argument where non-null required >>>>>> (argument 1) [-Wnonnull] >>>>>> pthread_create(0,0,0,0); pthread_cleanup_pop(0); >>>>>> ^ >>>>>> conftest.cpp:34:27: warning: null argument where non-null required >>>>>> (argument 3) [-Wnonnull] >>>>>> conftest.cpp:32:34: warning: 'th' is used uninitialized in this >>>>>> function >>>>>> [-Wuninitialized] >>>>>> pthread_t th; pthread_join(th, 0); >>>>>> ^ >>>>>> -pthread >>>>>> configure: /vexcl/vexcl.hpp not found >>>>>> configure: /include/vexcl/vexcl.hpp not found >>>>>> checking whether we are using the Microsoft C++ compiler... no >>>>>> checking CL/cl.h usability... no >>>>>> checking CL/cl.h presence... no >>>>>> checking for CL/cl.h... no >>>>>> checking OpenCL/cl.h usability... no >>>>>> checking OpenCL/cl.h presence... no >>>>>> checking for OpenCL/cl.h... no >>>>>> checking windows.h usability... no >>>>>> checking windows.h presence... no >>>>>> checking for windows.h... no >>>>>> checking for OpenCL library... no >>>>>> checking boost/system/error_code.hpp usability... yes >>>>>> checking boost/system/error_code.hpp presence... yes >>>>>> checking for boost/system/error_code.hpp... yes >>>>>> checking for the Boost system library... yes >>>>>> checking boost/chrono.hpp usability... yes >>>>>> checking boost/chrono.hpp presence... yes >>>>>> checking for boost/chrono.hpp... yes >>>>>> checking for the Boost chrono library... (cached) yes >>>>>> checking boost/date_time/posix_time/posix_time.hpp usability... no >>>>>> checking boost/date_time/posix_time/posix_time.hpp presence... yes >>>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>>> present but >>>>>> cannot be compiled >>>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>>> check >>>>>> for missing prerequisite headers? >>>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: see the >>>>>> Autoconf documentation >>>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>>> section >>>>>> "Present But Cannot Be Compiled" >>>>>> configure: WARNING: boost/date_time/posix_time/posix_time.hpp: >>>>>> proceeding >>>>>> with the compiler's result >>>>>> configure: WARNING: ## --------------------------------------- ## >>>>>> configure: WARNING: ## Report this to [email protected] ## >>>>>> configure: WARNING: ## --------------------------------------- ## >>>>>> checking for boost/date_time/posix_time/posix_time.hpp... no >>>>>> configure: error: cannot find >>>>>> boost/date_time/posix_time/posix_time.hpp >>>>>> configure: error: ./configure failed for contrib/metaphysicl/0.2.0 >>>>>> >>>>>> I thought the problem may have had to do with the installation of >>>>>> mpich >>>>>> but I reinstalled it and the problem persists. I am wondering if the >>>>>> problem is with libmesh, boost, or something else. >>>>>> >>>>>> I have read over some of the entries relating to this problem, and >>>>>> they did >>>>>> not help, although there are alot of entries so if someone has already >>>>>> solved this problem and you can point me in the direction of their >>>>>> post, >>>>>> that also works. >>>>>> >>>>>> Thanks, >>>>>> Harrison Rojak Pearce >>>>>> SDSU undergraduate in Chemical Physics >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> Check out the vibrant tech community on one of the world's most >>>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot >>>>>> _______________________________________________ >>>>>> Libmesh-users mailing list >>>>>> [email protected] >>>>>> https://lists.sourceforge.net/lists/listinfo/libmesh-users >>>>>> >>>>> >>>> >> > ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ Libmesh-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/libmesh-users
