If I understand correctly, the different glyph name is by design.
The technical documentation of TeX Gyre Schola
http://mirrors.ctan.org/fonts/tex-gyre/doc/fonts/tex-gyre/qcs-info.pdf
says in page 5,
", the OTF name or the OTF name placed above the Type 1 name (if they
differ)."
In the table of the document, several glyphs (not only ligature glyphs) have
different name.
---
** [issues:#4737] Add XeTeX for document building**
**Status:** Started
**Created:** Sat Jan 09, 2016 06:20 PM UTC by Masamichi Hosoda
**Last Updated:** Tue Feb 09, 2016 03:20 PM UTC
**Owner:** Masamichi Hosoda
Add XeTeX for document building
Prefer XeTeX than pdfTeX.
Discussion:
http://lists.gnu.org/archive/html/lilypond-devel/2015-12/msg00136.html
http://lists.gnu.org/archive/html/lilypond-devel/2016-01/msg00041.html
*** This patch requires Issue 4735. ***
https://sourceforge.net/p/testlilyissues/issues/4735/
http://codereview.appspot.com/285790043
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