My master's thesis is a modern edition of a book of 16th-century
madrigals. It is comprised of two parts: the first is all the discursive
stuff, and then the second is the text, scores, and apparatus. I simply
have a single .lytex file with entries like the following for each
madrigal:
\clearpage
\addcontentsline{toc}{subsection}{1. Amor, che sol dei cor leggiadri ha cura}
\label{madrigal01}
\lilypondfile{/home/aaron/svn/scores/out/01-3-01.ly}
In my case all the scores are in one place, so I simply \input this file
wherever I wish it to appear in the larger document. As you can see, you
can quite simply put a few madrigals in, then add some text, then do some
more scores, and back again. This is producing excellent results for me.
HTH!
Aaron
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