Well, I just replaced the working luatex binary by the one I built. If
it worked for the the old one, it should be fine for the new one, too, no?

Hmmm, maybe not... I have to say I've never dug into that, but it might not, no...

It's called texmf.cnf here, but I guess that was a typo. What exactly
should I adapt here?

You should adapt these variables, with the good absolute path values (not mine)

TEXMFMAIN = /usr/share/texmf
TEXMFDIST = /usr/share/texmf-texlive
TEXMFLOCAL = /usr/local/share/texmf
TEXMFSYSVAR = /var/lib/texmf
TEXMFSYSCONFIG = /etc/texmf

I think it should be enough...
--
Elie

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