So? Doesn't matter if you're programming a switch or a heart monitor. Learn how to properly package your application. Apparently it was done before LXC came along, so it should still be possible today. What you want is an easy way out of simply cloning an existing installation which is never a good idea as operating environments are never exactly the same. Any SA worth their salt would know this and package an application properly. This is going to come back and bite you in the ass, hard, some day.
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