I was able to get my configuration working by adding loadrt tp (not sure what that does), and changing some joints to axis names, and also modifying some gmoccapy pin names from the newer 5 axis version that I was using with linuxcnc to the 4 axis version of gmoccapy that comes with machinekit. The milling machine moves but will need some additional fine tuning to get all functions working. Right now I wish to proceed to try to link up to machinekit via a TCP link with some manual commands.So I will need to do some research on the format required by machinekit so it understands the commands being sent over the network link and be able to decode and display the information received back..
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