Here is the linuxcnc.log output:

Dec 18 16:04:06 debian msgd:0: startup pid=3743 flavor=rt-preempt rtlevel=1 
usrlevel=1 halsize=524288 shm=Posix cc=gcc 6.3.0 20170516  
version=v0.1~-----~025ac3b
Dec 18 16:04:06 debian msgd:0: ØMQ=4.2.1 czmq=4.0.2 protobuf=3.0.0 
atomics=gcc intrinsics    libwebsockets=2.0.3
Dec 18 16:04:06 debian msgd:0: configured: sha=025ac3b
Dec 18 16:04:06 debian msgd:0: built:      Nov 17 2017 17:21:35 sha=025ac3b
Dec 18 16:04:06 debian msgd:0: register_stuff: actual hostname as announced 
by avahi='debian.local'
Dec 18 16:04:06 debian msgd:0: zeroconf: registering: 'Log service on 
debian.local pid 3743'
Dec 18 16:04:07 debian rtapi:0: rtapi_app_main(motmod): -1 Operation not 
permitted
Dec 18 16:04:07 debian msgd:0: zeroconf: registered 'Log service on 
debian.local pid 3743' _machinekit._tcp 0 TXT 
"uuid=a42c8c6b-4025-4f83-ba28-dad21114744a" 
"instance=bfcb122a-e447-11e7-9912-b8ac6fa25b72" "service=log" 
"dsn=ipc:///tmp/0.log.a42c8c6b-4025-4f83-ba28-dad21114744a"
Dec 18 16:04:09 debian rtapi:0: unload: 'gantrykins' not loaded
Dec 18 16:04:09 debian msgd:0: rtapi_app exit detected - scheduled shutdown
Dec 18 16:04:11 debian msgd:0: msgd shutting down
Dec 18 16:04:11 debian msgd:0: zeroconf: unregistering 'Log service on 
debian.local pid 3743'
Dec 18 16:04:11 debian msgd:0: log buffer hwm: 0% (0 msgs, 0 bytes out of 
524288)
Dec 18 16:04:11 debian msgd:0: normal shutdown - global segment detached

for this input from the halfile:

# Generated by PNCconf at Mon Dec 18 08:40:09 2017
# If you make changes to this file, they will be
# overwritten when you run PNCconf again

loadrt gantrykins coordinates=XYYZ
loadrt [EMCMOT]EMCMOT servo_period_nsec=[EMCMOT]SERVO_PERIOD 
num_joints=[TRAJ]AXES
loadrt probe_parport
loadrt hostmot2
loadrt hm2_pci config=" num_encoders=1 num_pwmgens=0 num_3pwmgens=0 
num_stepgens=5 sserial_port_0=00xxxxxx " 
setp     hm2_5i25.0.watchdog.timeout_ns 10000000
loadrt abs names=abs.0,abs.1,abs.2,abs.3,abs.4

truncated at the end of the core input. This is from the Pncconf generated 
version. I have debug=5 in the INI.

On Monday, December 18, 2017 at 11:26:35 AM UTC-7, Bas de Bruijn wrote:
>
> Hi Jeff,
>
> On 18 Dec 2017, at 18:09, Jeff Washburn <[email protected] <javascript:>> 
> wrote:
>
> There must be a permission file. The* linuxcnc_module_helper* 
> documentation implies that there is a group list somewhere.
>
> This happens whether it's a self generated halfile or one put together by 
> Pncconf.
>
> Perhaps it's because the 5i25 is not hooked up to the G540?
>
>
> What configuration do you use? A github repo you can link to? Pastebin? 
> (No attachment please)
>
> What does /var/log/linuxcnc.log say after starting your config after 
> you've done "export DEBUG=5" in the terminal?
>
> We cant guess what's going on.
>

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