OK let me give more details then.
I did not use the time machine at all, it was not even configured.
Yesterday I did some work but then I figured out that I wanted to go back to 
what I had in the morning.
But the timemachine gave me the option to recover the file status I had 
yesterday morning.
When I chose some files to be recovered, the process was killed by telling me 
that the files could not be copied since I did not have authorisation for it.
Since then there are some stuff going wrong in my mac.
One of them is the macports.

Thanks again.
> On 2 Sep 2016, at 14:14, Chris Jones <jon...@hep.phy.cam.ac.uk> wrote:
> 
> 
> On 02/09/16 14:11, Ignatios Athanasiadis wrote:
>> Hi,
>> 
>> The command I used was : port version
>> 
>> Ignatios
> 
> Then yes, it looks like whatever it was you did (again, it helps to be 
> specific, you really have not said what you did) has hosed your macports 
> installation in someway. You can start by trying to just reinstall macports, 
> following
> 
> https://www.macports.org/install.php
> 
> If you are lucky, once 'port' is returned your installed ports might be OK, 
> but there is no way to know this from the information you have so far 
> provided, so you might end up having to reinstall them all as well.
> 
> Chris

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