On 11/10/2019 15:34 PM, Chris Jones wrote:
Hi,
Are you *really* sure you rebuilt *all* your ports natively for
Darwin19 (macOS10.15) ? Your output suggests not, i.e. from the first
part
> Driving: gfortran test.f90 -v -mmacosx-version-min=10.15.0
> -asm_macosx_version_min=10.15 -l gfortran -shared-libgcc
> Using built-in specs.
> COLLECT_GCC=gfortran
>
COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin18/9.2.0/lto-wrapper
> Target: x86_64-apple-darwin18
See Darwin 18 there. That is wrong, it should be 19, as in my output
Oberon ~/cernbox/MacPorts > gfortran-mp-9 -v test.f90
Driving: gfortran-mp-9 -v test.f90 -mmacosx-version-min=10.15.0
-asm_macosx_version_min=10.15 -l gfortran -shared-libgcc
Using built-in specs.
COLLECT_GCC=gfortran-mp-9
COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin19/9.2.0/lto-wrapper
Target: x86_64-apple-darwin19
I suspect you are using a gcc build (and probably others as well) that
where built for macOS10.14, not macOS10.15.
Following the migration guide exactly is not optional I am afraid....
This is what I did supposingly but with xcode11.0... but anyway, I will
try again with the new xcode.
I will maintain you informed... it happened to other people in the
office so if I solve this many people will be happy ;o)
Thanks a lot,
g.
cheers Chris
On 11/10/2019 1:41 pm, Guillaume Houzeaux @ BSC wrote:
Chris, thanks a lot for your very quick answer!
1. I followed the path for migration and reinstalled all packages. I
will try to do it once more to be sure.
2. Xcode version: 11.0
3. My test program is minimum:
program test
print*,'a'
end program test
4. The output with -v option is:
Driving: gfortran test.f90 -v -mmacosx-version-min=10.15.0
-asm_macosx_version_min=10.15 -l gfortran -shared-libgcc
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin18/9.2.0/lto-wrapper
Target: x86_64-apple-darwin18
Configured with:
/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_lang_gcc9/gcc9/work/gcc-9.2.0/configure
--prefix=/opt/local --build=x86_64-apple-darwin18
--enable-languages=c,c++,objc,obj-c++,lto,fortran
--libdir=/opt/local/lib/gcc9 --includedir=/opt/local/include/gcc9
--infodir=/opt/local/share/info --mandir=/opt/local/share/man
--datarootdir=/opt/local/share/gcc-9 --with-local-prefix=/opt/local
--with-system-zlib --disable-nls --program-suffix=-mp-9
--with-gxx-include-dir=/opt/local/include/gcc9/c++/
--with-gmp=/opt/local --with-mpfr=/opt/local --with-mpc=/opt/local
--with-isl=/opt/local --enable-stage1-checking --disable-multilib
--enable-lto --enable-libstdcxx-time
--with-build-config=bootstrap-debug --with-as=/opt/local/bin/as
--with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar
--with-bugurl=https://trac.macports.org/newticket --disable-tls
--with-pkgversion='MacPorts gcc9 9.2.0_0'
--with-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
Thread model: posix
gcc version 9.2.0 (MacPorts gcc9 9.2.0_0)
COLLECT_GCC_OPTIONS='-v' '-mmacosx-version-min=10.15.0'
'-asm_macosx_version_min=10.15' '-shared-libgcc' '-mtune=core2'
/opt/local/libexec/gcc/x86_64-apple-darwin18/9.2.0/f951 test.f90
-fPIC -quiet -dumpbase test.f90 -mmacosx-version-min=10.15.0
-mtune=core2 -auxbase test -version -fintrinsic-modules-path
/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0/finclude -o
/var/folders/1z/j0r1q88d2_95cj4fd50r39mr0000gr/T//ccZubFPj.s
GNU Fortran (MacPorts gcc9 9.2.0_0) version 9.2.0
(x86_64-apple-darwin18)
compiled by GNU C version 9.2.0, GMP version 6.1.2, MPFR version
4.0.2, MPC version 1.1.0, isl version isl-0.21-GMP
GGC heuristics: --param ggc-min-expand=100 --param
ggc-min-heapsize=131072
GNU Fortran2008 (MacPorts gcc9 9.2.0_0) version 9.2.0
(x86_64-apple-darwin18)
compiled by GNU C version 9.2.0, GMP version 6.1.2, MPFR version
4.0.2, MPC version 1.1.0, isl version isl-0.21-GMP
GGC heuristics: --param ggc-min-expand=100 --param
ggc-min-heapsize=131072
COLLECT_GCC_OPTIONS='-v' '-mmacosx-version-min=10.15.0'
'-shared-libgcc' '-mtune=core2'
/opt/local/bin/as -arch x86_64 -v -force_cpusubtype_ALL
-mmacosx-version-min=10.15 -o
/var/folders/1z/j0r1q88d2_95cj4fd50r39mr0000gr/T//cce0rRJI.o
/var/folders/1z/j0r1q88d2_95cj4fd50r39mr0000gr/T//ccZubFPj.s
Apple clang version 11.0.0 (clang-1100.0.33.8)
Target: x86_64-apple-darwin19.0.0
Thread model: posix
InstalledDir:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
"/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang"
-cc1as -triple x86_64-apple-macosx10.15.0 -filetype obj
-main-file-name ccZubFPj.s -target-cpu penryn -fdebug-compilation-dir
/Users/houzeaux/Desktop -dwarf-debug-producer Apple clang version
11.0.0 (clang-1100.0.33.8) -dwarf-version=4 -mrelocation-model pic -o
/var/folders/1z/j0r1q88d2_95cj4fd50r39mr0000gr/T//cce0rRJI.o
/var/folders/1z/j0r1q88d2_95cj4fd50r39mr0000gr/T//ccZubFPj.s
Reading specs from
/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0/../../../libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-v' '-mmacosx-version-min=10.15.0'
'-shared-libgcc' '-mtune=core2'
COMPILER_PATH=/opt/local/libexec/gcc/x86_64-apple-darwin18/9.2.0/:/opt/local/libexec/gcc/x86_64-apple-darwin18/9.2.0/:/opt/local/libexec/gcc/x86_64-apple-darwin18/:/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0/:/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/
LIBRARY_PATH=/usr/lib/:/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0/:/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0/../../../
COLLECT_GCC_OPTIONS='-v' '-mmacosx-version-min=10.15.0'
'-shared-libgcc' '-mtune=core2'
/opt/local/libexec/gcc/x86_64-apple-darwin18/9.2.0/collect2
-syslibroot
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/
-dynamic -arch x86_64 -macosx_version_min 10.15.0
-weak_reference_mismatches non-weak -o a.out
-L/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0
-L/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0/../../..
/var/folders/1z/j0r1q88d2_95cj4fd50r39mr0000gr/T//cce0rRJI.o
-lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc
-lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v
collect2 version 9.2.0
/opt/local/bin/ld -syslibroot
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/
-dynamic -arch x86_64 -macosx_version_min 10.15.0
-weak_reference_mismatches non-weak -o a.out
-L/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0
-L/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0/../../..
/var/folders/1z/j0r1q88d2_95cj4fd50r39mr0000gr/T//cce0rRJI.o
-lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc
-lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v
@(#)PROGRAM:ld PROJECT:ld64-512.4
BUILD 05:06:53 Aug 16 2019
configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32
i386 x86_64 x86_64h armv6m armv7k armv7m armv7em
Library search paths:
/opt/local/lib/gcc9/gcc/x86_64-apple-darwin18/9.2.0
/opt/local/lib/gcc9
Framework search paths:
ld: library not found for -lSystem
collect2: error: ld returned 1 exit status
one more request.
please post the full output from compiling your test code with the
-v option.
cheers Chris
On 11/10/2019 12:59 pm, Chris Jones wrote:
can you please direct us to the exact test application code you are
using ?
Also, can you confirm the exact Xcode version you are using ?
Have you correctly followed the macports migration guide after
updating your OS ?
https://trac.macports.org/wiki/Migration
cheers Chris
On 11/10/2019 12:55 pm, Guillaume Houzeaux @ BSC wrote:
Hello,
I'm compiling with gfortran9 on catalina and get this error:
gfortran test.f90
ld: library not found for -lSystem
collect2: error: ld returned 1 exit status
Seems that it does not find the library libSystem. I changed all
the library paths in my bash_profile
to include /usr/lib but does not work. The only solution for the
moment is to compile with
gfortran test.f90-L/usr/lib
but this is not a practical option... Any idea on how to fix this?
Thanks in advance
--
Guillaume Houzeaux
Team Leader
Dpt. Computer Applications in Science and Engineering
Barcelona Supercomputing Center (BSC-CNS)
Edificio NEXUS II - Office 3A, c) Jordi Girona 29
08034 Barcelona, Spain
Location:
<https://www.google.es/maps/place/Carrer+de+Jordi+Girona,+08034+Barcelona/@41.3881175,2.1132195,17z/data=!3m1!4b1!4m8!1m2!10m1!1e2!3m4!1s0x12a4985099390467:0xd9abcf1987739b3e!8m2!3d41.3881175!4d2.1154135?hl=en>
Tel: +34 93 413 7781
Skype user: guillaume_houzeaux_bsc
WWW: BSC profile <https://www.bsc.es/houzeaux-guillaume>
ResearcherID: D-4950-2012
Scientific Profile:
<https://www.researchgate.net/profile/Guillaume_Houzeaux>
<http://scholar.google.es/citations?user=cL9khdYAAAAJ&hl=en>
<http://orcid.org/0000-0002-2592-1426>
<http://www.researcherid.com/rid/D-4950-2012>
--
Guillaume Houzeaux
Team Leader
Dpt. Computer Applications in Science and Engineering
Barcelona Supercomputing Center (BSC-CNS)
Edificio NEXUS II - Office 3A, c) Jordi Girona 29
08034 Barcelona, Spain
Location:
<https://www.google.es/maps/place/Carrer+de+Jordi+Girona,+08034+Barcelona/@41.3881175,2.1132195,17z/data=!3m1!4b1!4m8!1m2!10m1!1e2!3m4!1s0x12a4985099390467:0xd9abcf1987739b3e!8m2!3d41.3881175!4d2.1154135?hl=en>
Tel: +34 93 413 7781
Skype user: guillaume_houzeaux_bsc
WWW: BSC profile <https://www.bsc.es/houzeaux-guillaume>
ResearcherID: D-4950-2012
Scientific Profile:
<https://www.researchgate.net/profile/Guillaume_Houzeaux>
<http://scholar.google.es/citations?user=cL9khdYAAAAJ&hl=en>
<http://orcid.org/0000-0002-2592-1426>
<http://www.researcherid.com/rid/D-4950-2012>
--
Guillaume Houzeaux
Team Leader
Dpt. Computer Applications in Science and Engineering
Barcelona Supercomputing Center (BSC-CNS)
Edificio NEXUS II - Office 3A, c) Jordi Girona 29
08034 Barcelona, Spain
Location:
<https://www.google.es/maps/place/Carrer+de+Jordi+Girona,+08034+Barcelona/@41.3881175,2.1132195,17z/data=!3m1!4b1!4m8!1m2!10m1!1e2!3m4!1s0x12a4985099390467:0xd9abcf1987739b3e!8m2!3d41.3881175!4d2.1154135?hl=en>
Tel: +34 93 413 7781
Skype user: guillaume_houzeaux_bsc
WWW: BSC profile <https://www.bsc.es/houzeaux-guillaume>
ResearcherID: D-4950-2012
Scientific Profile:
<https://www.researchgate.net/profile/Guillaume_Houzeaux>
<http://scholar.google.es/citations?user=cL9khdYAAAAJ&hl=en>
<http://orcid.org/0000-0002-2592-1426>
<http://www.researcherid.com/rid/D-4950-2012>
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