yes… Your build is not being done from a clean start. Do
sudo port clean atlas sudo port install atlas Chris > On 18 Apr 2021, at 2:49 pm, Lenore Horner <[email protected]> wrote: > > I think that just means you need to clean and then retry. > >> On Apr 18, 2021, at 09:17, [email protected] wrote: >> >> I tried also: >> >> pmm:~ pet$ sudo port install atlas -gcc5 >> Password: >> Error: Requested variants "" do not match those the build was started with: >> "+gcc5". >> Error: Please use the same variants again, or run 'port clean atlas' first >> to remove the existing partially completed build. >> Error: Follow https://guide.macports.org/#project.tickets to report a bug. >> Error: Processing of port atlas failed >> pmm:~ pet$ sudo port clean atlas >> ---> Cleaning atlas >> pmm:~ pet$ sudo port install atlas -gcc5 >> Warning: The macOS 11.2 SDK does not appear to be installed. Ports may not >> build correctly. >> Warning: You can install it as part of the Xcode Command Line Tools package >> by running `xcode-select --install'. >> ---> Fetching archive for atlas >> ---> Attempting to fetch atlas-3.10.2_2.darwin_20.arm64.tbz2 from >> https://packages.macports.org/atlas >> ---> Attempting to fetch atlas-3.10.2_2.darwin_20.arm64.tbz2 from >> https://cph.dk.packages.macports.org/atlas >> ---> Attempting to fetch atlas-3.10.2_2.darwin_20.arm64.tbz2 from >> https://lil.fr.packages.macports.org/atlas >> ---> Fetching distfiles for atlas >> ---> Attempting to fetch atlas3.10.2.tar.bz2 from >> https://distfiles.macports.org/atlas >> ---> Attempting to fetch lapack-3.6.0.tgz from >> https://distfiles.macports.org/atlas >> ---> Verifying checksums for atlas >> >> ---> Extracting atlas >> ---> Applying patches to atlas >> ---> Configuring atlas >> Selected C compiler: /usr/bin/clang >> Selected F77 compiler: gfortran5 >> Warning: reinplace s|-no-cpp-precomp||g didn't change anything in >> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/CONFIG/src/atlcomp.txt >> Error: Failed to configure atlas: sysctl failed: No such file or directory >> Error: See >> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log >> for details. >> Error: Follow https://guide.macports.org/#project.tickets to report a bug. >> Error: Processing of port atlas failed >> >> >> ______________________________________________________________ >>> Od: [email protected] >>> Komu: "Christopher Jones" <[email protected]> >>> Datum: 18.04.2021 15:13 >>> Předmět: Re: Update on Big Sur Problems >>> >>> CC: <[email protected]> >>> pmm:~ pet$ port info atlas >>> atlas @3.10.2_2 (math) >>> Variants: gcc49, [+]gcc5, mpclang37, nofortran, universal >>> >>> Description: Provides a complete BLAS and LAPACK API. >>> ATLAS achieves performance on par with machine-specific >>> tuned libraries. >>> Homepage: http://math-atlas.sourceforge.net/ >>> >>> Build Dependencies: gcc5 >>> Library Dependencies: libgcc, libgcc6 >>> Platforms: darwin >>> License: BSD >>> Maintainers: Email: [email protected], GitHub: Veence >>> pmm:~ pet$ port rdeps atlas >>> The following ports are dependencies of atlas @3.10.2_2+gcc5: >>> gcc5 >>> xz >>> libiconv >>> gperf >>> gettext >>> ncurses >>> cctools >>> gmp >>> isl18 >>> ld64 >>> ld64-xcode >>> zlib >>> libmpc >>> mpfr >>> gcc_select >>> libgcc6 >>> isl >>> libgcc7 >>> libgcc8 >>> libgcc9 >>> libgcc >>> libgcc10 >>> pmm:~ pet$ >>> >>> >>> ______________________________________________________________ >>>> Od: "Christopher Jones" <[email protected]> >>>> Komu: [email protected] >>>> Datum: 18.04.2021 14:34 >>>> Předmět: Re: Update on Big Sur Problems >>>> >>>> CC: <[email protected], [email protected], >>>> [email protected]> >>>> >>>> So the issue is with atlas, it is forcing the use of gcc5, which will >>>> never work on M1 machines. >>>> >>>> please run >>>> >>>> port info atlas >>>> port rdeps atlas >>>> >>>> I am not sure why you get >>>> >>>> atlas >>>> gcc5 >>>> isl18 >>>> libgcc6 >>>> libgcc7 >>>> libgcc8 >>>> libgcc9 >>>> libgcc >>>> libgcc10 >>>> >>>> below, as on my Intel macOS11 machine I don’t see this in the dep tree for >>>> atlas >>>> >>>> Oberon ~/Projects/MacPorts/ports > port info atlas >>>> atlas @3.10.2_2 (math) >>>> Variants: gcc49, gcc5, mpclang37, nofortran >>>> >>>> Description: Provides a complete BLAS and LAPACK API. >>>> ATLAS achieves performance on par with machine-specific >>>> tuned libraries. >>>> Homepage: http://math-atlas.sourceforge.net/ >>>> >>>> Extract Dependencies: lbzip2 >>>> Platforms: darwin >>>> License: BSD >>>> Maintainers: Email: [email protected], GitHub: Veence >>>> Oberon ~/Projects/MacPorts/ports > port rdeps atlas >>>> The following ports are dependencies of atlas @3.10.2_2: >>>> lbzip2 >>>> >>>> Are you perhaps forcing the use of a gcc5 variant in some way ? >>>> >>>> Please check trac for an existing ticket against atlas, and if it does not >>>> exist create one. >>>> >>>> In the meantime I suggest you try without using the atlas variant. >>>> >>>> Chris >>>> >>>>> On 18 Apr 2021, at 12:25 pm, <[email protected]> >>>>> <[email protected]> wrote: >>>>> >>>>> Hi, >>>>> >>>>> pmm:~ pet$ port info sundials2 +atlas >>>>> sundials2 @2.7.0_3 (math, devel) >>>>> Variants: accelerate, +atlas, clang11, clangdevel, debug, >>>>> doc, examples, g95, gccdevel, [+]gfortran, >>>>> [+]mpich, openblas, openmpi, universal >>>>> >>>>> Description: SUNDIALS consists of the following five solvers: >>>>> CVODE solves initial value problems for ordinary >>>>> differential equation (ODE) systems. CVODES solves ODE >>>>> systems and includes sensitivity analysis >>>>> capabilities (forward and adjoint). IDA solves initial >>>>> value problems for differential-algebraic >>>>> equation (DAE) systems. IDAS solves DAE systems and >>>>> includes sensitivity analysis capabilities >>>>> (forward and adjoint). KINSOL solves nonlinear >>>>> algebraic systems. >>>>> Homepage: https://computing.llnl.gov/projects/sundials >>>>> >>>>> Build Dependencies: cmake, gcc-devel >>>>> Library Dependencies: SuiteSparse_KLU, libgcc-devel, mpich-default, atlas >>>>> Conflicts with: sundials >>>>> Platforms: darwin >>>>> License: BSD >>>>> Maintainers: none >>>>> >>>>> pmm:~ pet$ port rdeps sundials2 +atlas >>>>> The following ports are dependencies of sundials2 >>>>> @2.7.0_3+atlas+gfortran+mpich: >>>>> cmake >>>>> libcxx >>>>> xz >>>>> libiconv >>>>> gperf >>>>> gettext >>>>> ncurses >>>>> curl >>>>> pkgconfig >>>>> libidn2 >>>>> libunistring >>>>> perl5 >>>>> perl5.28 >>>>> db48 >>>>> gdbm >>>>> readline >>>>> texinfo >>>>> help2man >>>>> p5.28-locale-gettext >>>>> perl5.30 >>>>> autoconf >>>>> m4 >>>>> automake >>>>> libtool >>>>> xattr >>>>> unzip >>>>> libpsl >>>>> python39 >>>>> bzip2 >>>>> expat >>>>> libedit >>>>> libffi >>>>> expect >>>>> tcl >>>>> dejagnu >>>>> openssl >>>>> zlib >>>>> sqlite3 >>>>> python_select >>>>> python3_select >>>>> glib2 >>>>> libxml2 >>>>> icu >>>>> pcre >>>>> zstd >>>>> lz4 >>>>> curl-ca-bundle >>>>> libarchive >>>>> lzo2 >>>>> libuv >>>>> gcc-devel >>>>> cctools >>>>> gmp >>>>> isl >>>>> ld64 >>>>> ld64-xcode >>>>> libmpc >>>>> mpfr >>>>> gcc_select >>>>> libgcc-devel >>>>> SuiteSparse_KLU >>>>> SuiteSparse_config >>>>> SuiteSparse_AMD >>>>> SuiteSparse_BTF >>>>> SuiteSparse_COLAMD >>>>> mpich-default >>>>> mpi_select >>>>> mpi-doc >>>>> atlas >>>>> gcc5 >>>>> isl18 >>>>> libgcc6 >>>>> libgcc7 >>>>> libgcc8 >>>>> libgcc9 >>>>> libgcc >>>>> libgcc10 >>>>> pmm:~ pet$ >>>>> >>>>> ps: without +atlas sundials2 installs successfully >>>>> >>>>> pmm:~ pet$ uname -a >>>>> Darwin pmm.local 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:06:51 >>>>> PST 2021; root:xnu-7195.81.3~1/RELEASE_ARM64_T8101 arm64 >>>>> >>>>> Petr >>>>> >>>>> >>>>> ______________________________________________________________ >>>>>> Od: "Christopher Jones" <[email protected]> >>>>>> Komu: [email protected] >>>>>> Datum: 18.04.2021 13:08 >>>>>> Předmět: Re: Update on Big Sur Problems >>>>>> >>>>>> CC: <[email protected], [email protected], >>>>>> [email protected]> >>>>>> Hi, >>>>>> >>>>>> Any port that forces the use of gcc10 or older on M1 macs cannot work, >>>>>> as these gcc versions are never going to be supported on these machines. >>>>>> Even gcc11 support seems unlikely at this time, so for a while gccdevel >>>>>> is likely going to be the only supported version on these machines, >>>>>> which currently uses a special fork of the gcc mainline by the primary >>>>>> Darwin maintainer with experimental M1 support. >>>>>> >>>>>> However, ports using the compilers PG should automatically use gccdevel, >>>>>> so we need to see why the port below is trying to install libgcc9, as >>>>>> this is incorrect. Please show what >>>>>> >>>>>> port info sundials2 +atlas >>>>>> >>>>>> and >>>>>> >>>>>> port rdeps sundials2 +atlas >>>>>> >>>>>> Finally, if you want this to get fixed you need to follow the final >>>>>> instructions below and submit a trac ticket for the issue. >>>>>> >>>>>> Chris >>>>>> >>>>>>> On 18 Apr 2021, at 11:40 am, [email protected] wrote: >>>>>>> >>>>>>> Hello, >>>>>>> >>>>>>> I run "sudo port selfupdate" and "sudo port upgrade outdated" >>>>>>> occasionally and I see that there are updates and improvements. Which >>>>>>> is nice. >>>>>>> >>>>>>> Yes, gcc-devel is pulled by default, it includes fortran and it seems >>>>>>> to work. >>>>>>> >>>>>>> However I am experiencing problems with some packages which need other >>>>>>> version which is ether not available for arm64 or it is conflict with >>>>>>> gcc-devel . >>>>>>> >>>>>>> Just as an example, I tried to install cantera and it wants sundials2 >>>>>>> +atlas >>>>>>> but : >>>>>>> >>>>>>> sudo port install sundials2 +atlas >>>>>>> Warning: The macOS 11.2 SDK does not appear to be installed. Ports may >>>>>>> not build correctly. >>>>>>> Warning: You can install it as part of the Xcode Command Line Tools >>>>>>> package by running `xcode-select --install'. >>>>>>> ---> Computing dependencies for sundials2 >>>>>>> Error: Can't install libgcc9 because conflicting ports are active: >>>>>>> libgcc-devel >>>>>>> Error: Follow https://guide.macports.org/#project.tickets to report a >>>>>>> bug. >>>>>>> Error: Processing of port sundials2 failed >>>>>>> >>>>>>> And I am finished at this point. >>>>>>> >>>>>>> Petr >>>>>>> >>>>>>> >>>>>>> ______________________________________________________________ >>>>>>>> Od: "Marius Schamschula" <[email protected]> >>>>>>>> Komu: "MacPorts Users" <[email protected]> >>>>>>>> Datum: 17.04.2021 20:50 >>>>>>>> Předmět: Re: Update on Big Sur Problems >>>>>>>> >>>>>>>> James, >>>>>>>> >>>>>>>> gcc-devel works fine on M1 macs. E.g. I’ve used it to install octave. >>>>>>>> >>>>>>>>> On Apr 17, 2021, at 1:05 PM, James Secan <[email protected]> >>>>>>>>> wrote: >>>>>>>>> >>>>>>>>> I just checked the MacPorts wiki page for Big Sur problems and noted >>>>>>>>> that it hasn’t been updated for three months (at least that’s what >>>>>>>>> the wiki page says). With the possibility that new M1 iMacs might >>>>>>>>> show up soon can you provide a short update on where things stand >>>>>>>>> vis-a-vis Big Sur and M1-based Macs? I’m most interested in where >>>>>>>>> things stand on the gcc compiler package (gfortran in particular). >>>>>>>>> >>>>>>>>> Thanks. >>>>>>>>> Jim >>>>>>>>> Seattle, WA >>>>>>>> >>>>>>>> Marius >>>>>>>> -- >>>>>>>> Marius Schamschula >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> Marius >>>>>>>> -- >>>>>>>> Marius Schamschula >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>> >>>>>> >>>>>> >>>> >>>> >>>> >>> >>> >
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