The indicator light (a small dot) is on the dock item if OS X is told to show 
in in System Preferences.  It’s the default.  That’s the only way to know if 
the app is still open, unless you look carefully at the menu bar (which, in 
case you didn’t know, is shared between every app on the system and simply 
changes according to which app has focus).

In these enlightened times of sudden termination and iOS-like process and power 
management, it’s actually very rare indeed that one benefits from manually 
closing windows or quitting apps.  Normally, all the state is saved 
automatically, and there is even an option to reopen all the windows that were 
open when the app quit (not the default, but my preference).  Still, out of 
habit, I close windows and quit apps when I’ve finished with them.  Same for 
iOS.  A tidy process list reflects an ordered mind, and all that.

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