Hi,
I am trying to adapt the BioMart ensembl_mart_40 database to add sage tag data. To start, I thought I would add a new table based on one of the xref tables. My table
(hsapiens_gene_ensembl__xref_sage_tag__dm) I have added is very similar to other xref tables (contains columns gene_id_key, gene_stable_id, transcript_id_key, transcript_stable_id,translation_id,
translation_stable_id, display_id_list, dbprimary_id). After importing ensembl_mart_40.hsapiens_gene_ensembl in MartEditor I edited it (see attached snaphot of MartEditor sshot-2.png) but when I try
and export I get the error message (see sshot-1.png).
I have also saved the xml from the hsapiens_gene_ensembl at:
http://neelix.molbiol.ox.ac.uk:8080/userweb/staylor/biomart/ensembl_mart_40.hsapiens_gene_ensembl.xml
I am obviously missing a further configuration step but I am unsure what to do
next.
Thanks for any help,
Steve
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Medical Sciences Division
Weatherall Institute of Molecular Medicine/Sir William Dunn School
Oxford University
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