Hello Steve, apologies for the delay in answering - it slipped through the net yesterday. Unfortunately the EBI spam monitor removed the attachments so can you send me the mail again with the error message pasted in the text. Also which version of MartEditor - the latest stable 0_4 branch one downloaded from biomart.org presumably?
Best wishes Damian On Wed, 13 Sep 2006, Steve Taylor wrote: > Hi, > > I am trying to adapt the BioMart ensembl_mart_40 database to add sage tag > data. To start, I thought I would add a new table based on one of the xref > tables. My table > (hsapiens_gene_ensembl__xref_sage_tag__dm) I have added is very similar to > other xref tables (contains columns gene_id_key, gene_stable_id, > transcript_id_key, transcript_stable_id,translation_id, > translation_stable_id, display_id_list, dbprimary_id). After importing > ensembl_mart_40.hsapiens_gene_ensembl in MartEditor I edited it (see > attached snaphot of MartEditor sshot-2.png) but when I try > and export I get the error message (see sshot-1.png). > > I have also saved the xml from the hsapiens_gene_ensembl at: > > http://neelix.molbiol.ox.ac.uk:8080/userweb/staylor/biomart/ensembl_mart_40.hsapiens_gene_ensembl.xml > > I am obviously missing a further configuration step but I am unsure what to > do next. > > Thanks for any help, > > Steve > ------------------------------------------------------------------ > Medical Sciences Division > Weatherall Institute of Molecular Medicine/Sir William Dunn School > Oxford University >
