hi,
Thanks for your help with this. It works, I set the qualifier and
legal_qualifier to 'like' and used the '%' in the search.
Thank you again,
Jennifer
Arek Kasprzyk wrote:
On 24 Jan 2007, at 17:17, Richard Holland wrote:
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Sorry. I didn't read my response thoroughly before sending it.
Arek is indeed right, we DO support them. For some reason I believed
otherwise... but that's beside the point. Apologies.
I just tried the dictybase gene filter in 0.5 and it does actually
still
work. Damian can probably help you get it configured, or you can
connect
to dictybase with MartEditor and copy what you find there.
Next time I should test things first! :)
well this test does actually tests 0.4 since DictyBase is still on 0.4
and we simply send xml there so we probably should double check
it with 0.5 anyway if Jennifer still has problems.
Jennifer - could you try again by specifying 'like' as a qualifier
and use '%' for searches and if this does not work for you,
we'll look into it/fix it if necessary
a.
cheers,
Richard
Arek Kasprzyk wrote:
On 24 Jan 2007, at 16:52, Richard Holland wrote:
We don't support LIKE or regular expressions at all. We only support
complete values.
Hang on .... let's not paint such a negative picture ;-)
we DO support them. If you want an example look at dictybase Gene
filters,
You need to specify 'like' as a qualifier and a legal qualifier
and use
'%" for a wildcard when searching.
(They do work, I just checked - or at least they work in 0.4 unless
something happened to them in 0.5 - I hope not)
Jennifer, could you try again according to the above and see if
this helps?
a.
for your reference the config is in
http://www.biomart.org/biomart/martservice?
type=configuration&dataset=gene
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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--
Dr. Jennifer Siepen
Faculty of Life Sciences,
University of Manchester,
Smith Building, Oxford Rd,
Manchester, M13 9PT, UK.
Tel: +44 (0)161 2751680
