I have a similar problem. The old version (half year ago) was quiet good to download gene data. but current version
Got several errors when I download gene data from bioMart: 1. when a gene has several exons, only one exon's start and end (chr bp) can be obtained. 2. outputted transcript attributes are wrong position. _____ From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Maratou, Klio Sent: Monday, 12 February 2007 10:18 PM To: [email protected] Subject: [mart-dev] FW: query output inconsistency Klio Maratou, PhD MRC Clinical Sciences Centre Imperial College School of Medicine Hammersmith Hospital Du Cane Road London, W12 ONN Email:[EMAIL PROTECTED] Tel: 020 8383 4319 Fax: 020 8383 8577 _____ From: Maratou, Klio Sent: Mon 12/02/2007 11:00 To: [EMAIL PROTECTED] Subject: query output inconsistency I have a question about an inconsistency that I found when I query the biomart Rattus norvegicus genes (RGSC3.4) dataset. If under Filters I use the chromosome number along with base start and end positions to query biomart, then I get a specific number of genes that are in this genomic interval. However, if I repeat this query using marker names for start and end, then I get a different number of genes for the same genomic interval. The sequence start and end positions that I use are based on the sequence positions of the markers. Why is there a difference in the output? Best wishes, Klio Maratou Klio Maratou, PhD MRC Clinical Sciences Centre Imperial College School of Medicine Hammersmith Hospital Du Cane Road London, W12 ONN Email:[EMAIL PROTECTED] Tel: 020 8383 4319 Fax: 020 8383 8577
