On Tue, 13 Feb 2007, Jiyuan An wrote: > I have a similar problem. > > The old version (half year ago) was quiet good to download gene data. but > current version > > Got several errors when I download gene data from bioMart: > > 1. when a gene has several exons, only one exon's start and end (chr > bp) can be obtained.
do you mean on the FASTA sequence header? From the structure attribute page you can still get all the exons but there is a problem with the FASTA header attributes that we need to fix > 2. outputted transcript attributes are wrong position. > again - is this on teh FASTA header? I will investigate best wishes Damian > > > _____ > > From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf > Of Maratou, Klio > Sent: Monday, 12 February 2007 10:18 PM > To: [email protected] > Subject: [mart-dev] FW: query output inconsistency > > > > > > > > Klio Maratou, PhD > > MRC Clinical Sciences Centre > > Imperial College School of Medicine > > Hammersmith Hospital > > Du Cane Road > > London, W12 ONN > > Email:[EMAIL PROTECTED] > > Tel: 020 8383 4319 > Fax: 020 8383 8577 > > > > _____ > > From: Maratou, Klio > Sent: Mon 12/02/2007 11:00 > To: [EMAIL PROTECTED] > Subject: query output inconsistency > > I have a question about an inconsistency that I found when I query the > biomart Rattus norvegicus genes (RGSC3.4) dataset. If under Filters I use > the chromosome number along with base start and end positions to query > biomart, then I get a specific number of genes that are in this genomic > interval. However, if I repeat this query using marker names for start and > end, then I get a different number of genes for the same genomic interval. > The sequence start and end positions that I use are based on the sequence > positions of the markers. > > Why is there a difference in the output? > > Best wishes, > > Klio Maratou > > > > Klio Maratou, PhD > > MRC Clinical Sciences Centre > > Imperial College School of Medicine > > Hammersmith Hospital > > Du Cane Road > > London, W12 ONN > > Email:[EMAIL PROTECTED] > > Tel: 020 8383 4319 > Fax: 020 8383 8577 > >
