Hi Syed, I did a clean reconfiguration this time I received a warning during configuration as follows. > perl bin/configure.pl -r conf/martDBLocation.xml
Do you want to install in API only mode [y/n] [n]:
Checking prerequisites ...[Looks good]
DO YOU WANT TO USE EXISTING SERVER CONFIGURATION [y/n] [y]: n
Checking several common Apache locations...done.
Select either one of the detected httpd paths on the list, OR enter the
path you wish to use:
/usr/sbin/apache
/usr/sbin/apache2
[1]: /caprisa/usr/local/apache2/bin/apachectl
Got usable Apache in /caprisa/usr/local/apache2/bin/apachectl, probing for
version & ModPerl configuration
Have Apache DSO-support and ModPerl library file present, configuring
ModPerl in httpd.conf.
Enter the server host OR default [ruth]:
Enter the server port OR default [5555]:
Enter proxy OR default :
Enter the required script location OR default [biomart]:
Libdir /home/ruby/prj/biomart/biomart-test2/lib is not in @INC, adding to
@INC
Processing Cached Registry:
/home/ruby/prj/biomart/biomart-test2/conf/cachedRegistries/martDBLocation.xml.cached
Then I receive an error when I try accessing the web application as follows.
[Thu Mar 22 17:32:06 2007] [error] [client 127.0.0.1] Use of uninitialized
value in concatenation (.) or string at
/usr/lib/perl5/ModPerl/RegistryCooker.pm line 636.\n, referer:
http://localhost:5555/
Am attaching the current conf/httpd.conf
Allan.
> Hi Allan
> I can see that there are configuration directives completely missing
> from your httpd.conf.
>
> Please do a clean check out, and reconfigure again.
>
> Cheers
> Syed
>
>
> On Thu, 2007-03-22 at 17:01 +0200, allank wrote:
>> Hi all,
>> I am experiencing an error running Biomart 0.5, the web browser reports
>> internal server error a look at the logs (of my biomart-perl directory)
>> shows a "No such file or directory: exec of .. cgi-bin/martview.
>> The configuration process(perl bin/configure.pl -r
>> conf/myRegisteration.xml) goes through successfully, but I get an
>> internal server error when I try accessing the web resource of my newly
>> installed biomart via a browser.
>>
>> Allan.
>>
> --
> ======================================
> Syed Haider.
> EMBL-European Bioinformatics Institute
> Wellcome Trust Genome Campus, Hinxton,
> Cambridge CB10 1SD, UK.
> ======================================
>
>
httpd.conf
Description: Binary data
